Information for 13-CTCTGGCTGAGAA (Motif 16)

A G T C A C G T A G T C A C G T A T C G A C T G A G T C A G C T C T A G C T G A A T C G G T C A C G T A
Reverse Opposite:
A C G T A C G T A T G C A G C T A G T C C T G A A C T G A G T C A T G C G T C A A C T G C G T A C T A G
p-value:1e-10
log p-value:-2.406e+01
Information Content per bp:1.872
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.0 +/- 9.9bp
Average Position of motif in Background37.4 +/- 8.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTCTGGCTGAGAA
GGTCTGGCAT----
 A C G T A G T C A C G T A G T C A C G T A T C G A C T G A G T C A G C T C T A G C T G A A T C G G T C A C G T A
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CTCTGGCTGAGAA
--TTGGCA-----
 A G T C A C G T A G T C A C G T A T C G A C T G A G T C A G C T C T A G C T G A A T C G G T C A C G T A
A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CTCTGGCTGAGAA
--CCTGCTGAGH-
 A G T C A C G T A G T C A C G T A T C G A C T G A G T C A G C T C T A G C T G A A T C G G T C A C G T A
A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CTCTGGCTGAGAA--------
-YCAGGCWCAGTACCAGGCTC
 A G T C A C G T A G T C A C G T A T C G A C T G A G T C A G C T C T A G C T G A A T C G G T C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G T C T G A C G C T A C T A G C T A G G A T C G C A T A T G C C G T A C T A G C A G T T C G A A T G C A G T C C G T A C A T G C T A G G T A C G A C T A T G C

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------CTCTGGCTGAGAA
NNTNNTGTCTGGNNTNG--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C G T A T C G A C T G A G T C A G C T C T A G C T G A A T C G G T C A C G T A
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CTCTGGCTGAGAA
-NTTGGCANN---
 A G T C A C G T A G T C A C G T A T C G A C T G A G T C A G C T C T A G C T G A A T C G G T C A C G T A
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T

PB0139.1_Irf5_2/Jaspar

Match Rank:7
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CTCTGGCTGAGAA
NNAATTCTCGNTNAN--
 A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C G T A T C G A C T G A G T C A G C T C T A G C T G A A T C G G T C A C G T A
A T C G T A C G C T G A C T G A G A C T G A C T T A G C A G C T A G T C C A T G C T A G G C A T G A T C C G T A T C G A A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CTCTGGCTGAGAA
--TWGTCTGV---
 A G T C A C G T A G T C A C G T A T C G A C T G A G T C A G C T C T A G C T G A A T C G G T C A C G T A
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CTCTGGCTGAGAA
GGCCYCCTGCTGDGH-
 A C G T A C G T A C G T A G T C A C G T A G T C A C G T A T C G A C T G A G T C A G C T C T A G C T G A A T C G G T C A C G T A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CTCTGGCTGAGAA-
TCNCCTGCTGNGNNN
 A C G T A G T C A C G T A G T C A C G T A T C G A C T G A G T C A G C T C T A G C T G A A T C G G T C A C G T A A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G