Information for 9-CAGCCAATCG (Motif 10)

T A G C C G T A T C A G T G A C T A G C C T G A C G T A C A G T G T A C A T C G
Reverse Opposite:
A T G C C A T G G T C A G C A T G A C T A T C G A C T G A G T C G C A T A T C G
p-value:1e-12
log p-value:-2.876e+01
Information Content per bp:1.657
Number of Target Sequences with motif63.0
Percentage of Target Sequences with motif6.50%
Number of Background Sequences with motif1032.9
Percentage of Background Sequences with motif2.27%
Average Position of motif in Targets47.7 +/- 25.9bp
Average Position of motif in Background49.5 +/- 33.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.82
Offset:1
Orientation:forward strand
Alignment:CAGCCAATCG-
-AGCCAATCGG
 T A G C C G T A T C A G T G A C T A G C C T G A C G T A C A G T G T A C A T C G A C G T
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--CAGCCAATCG
ACTAGCCAATCA
 A C G T A C G T T A G C C G T A T C A G T G A C T A G C C T G A C G T A C A G T G T A C A T C G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CAGCCAATCG-
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T T A G C C G T A T C A G T G A C T A G C C T G A C G T A C A G T G T A C A T C G A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CAGCCAATCG
-TGCCAA---
 T A G C C G T A T C A G T G A C T A G C C T G A C G T A C A G T G T A C A T C G
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CAGCCAATCG
CGTGCCAAG--
 A C G T T A G C C G T A T C A G T G A C T A G C C T G A C G T A C A G T G T A C A T C G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAATCG
BCAGACWA---
 A C G T T A G C C G T A T C A G T G A C T A G C C T G A C G T A C A G T G T A C A T C G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CAGCCAATCG
CAGCC-----
 T A G C C G T A T C A G T G A C T A G C C T G A C G T A C A G T G T A C A T C G
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAATCG-------
TGGACCAATCAGCACTCT
 A C G T T A G C C G T A T C A G T G A C T A G C C T G A C G T A C A G T G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CAGCCAATCG
GGTGCCAAGT-
 A C G T T A G C C G T A T C A G T G A C T A G C C T G A C G T A C A G T G T A C A T C G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAATCG----
SCAGYCADGCATGAC
 A C G T T A G C C G T A T C A G T G A C T A G C C T G A C G T A C A G T G T A C A T C G A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C