Information for 6-GYCTATWWAD (Motif 10)

A T C G A G T C A G T C A G C T G C T A A C G T C G A T C G A T C G T A C T A G
Reverse Opposite:
G A T C A C G T C G T A C G T A C G T A C G A T C T G A C T A G T C A G A T G C
p-value:1e-12
log p-value:-2.794e+01
Information Content per bp:1.683
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif3.97%
Number of Background Sequences with motif442.8
Percentage of Background Sequences with motif0.96%
Average Position of motif in Targets52.6 +/- 24.6bp
Average Position of motif in Background48.9 +/- 35.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:GYCTATWWAD--
GNCTATAAAAGG
 A T C G A G T C A G T C A G C T G C T A A C G T C G A T C G A T C G T A C T A G A C G T A C G T
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:2
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GYCTATWWAD
NGCAATTAAA
 A T C G A G T C A G T C A G C T G C T A A C G T C G A T C G A T C G T A C T A G
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

POL012.1_TATA-Box/Jaspar

Match Rank:3
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GYCTATWWAD-------
--GTATAAAAGGCGGGG
 A T C G A G T C A G T C A G C T G C T A A C G T C G A T C G A T C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:4
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GYCTATWWAD-------
--GTATAAAAGGCGGGG
 A T C G A G T C A G T C A G C T G C T A A C G T C G A T C G A T C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GYCTATWWAD--
NGYCATAAAWCH
 A T C G A G T C A G T C A G C T G C T A A C G T C G A T C G A T C G T A C T A G A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GYCTATWWAD
NCYAATAAAA
 A T C G A G T C A G T C A G C T G C T A A C G T C G A T C G A T C G T A C T A G
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

PH0056.1_Hoxa9/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GYCTATWWAD-----
ACGGCCATAAAATTAAT
 A C G T A C G T A T C G A G T C A G T C A G C T G C T A A C G T C G A T C G A T C G T A C T A G A C G T A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

HOXA13/MA0650.1/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GYCTATWWAD-
-CCAATAAAAA
 A T C G A G T C A G T C A G C T G C T A A C G T C G A T C G A T C G T A C T A G A C G T
A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

HOXB13/MA0901.1/Jaspar

Match Rank:9
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GYCTATWWAD-
-CCAATAAAAC
 A T C G A G T C A G T C A G C T G C T A A C G T C G A T C G A T C G T A C T A G A C G T
A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

HOXD13/MA0909.1/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GYCTATWWAD-
-CCAATAAAAA
 A T C G A G T C A G T C A G C T G C T A A C G T C G A T C G A T C G T A C T A G A C G T
A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A