Information for 5-GGATTGGCTG (Motif 5)

A C T G T C A G C T G A C G A T A C G T A C T G A C T G G T A C A C G T A T C G
Reverse Opposite:
A T G C T G C A A C T G G T A C A G T C C G T A C G T A G A C T A G T C T G A C
p-value:1e-18
log p-value:-4.190e+01
Information Content per bp:1.727
Number of Target Sequences with motif53.0
Percentage of Target Sequences with motif5.44%
Number of Background Sequences with motif540.8
Percentage of Background Sequences with motif1.21%
Average Position of motif in Targets53.4 +/- 24.8bp
Average Position of motif in Background47.1 +/- 37.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-GGATTGGCTG
CCGATTGGCT-
 A C G T A C T G T C A G C T G A C G A T A C G T A C T G A C T G G T A C A C G T A T C G
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GGATTGGCTG--
TGATTGGCTANN
 A C T G T C A G C T G A C G A T A C G T A C T G A C T G G T A C A C G T A T C G A C G T A C G T
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.74
Offset:3
Orientation:forward strand
Alignment:GGATTGGCTG
---TTGGCA-
 A C T G T C A G C T G A C G A T A C G T A C T G A C T G G T A C A C G T A T C G
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

NFYB/MA0502.1/Jaspar

Match Rank:4
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GGATTGGCTG----
CTGATTGGTCNATTT
 A C G T A C T G T C A G C T G A C G A T A C G T A C T G A C T G G T A C A C G T A T C G A C G T A C G T A C G T A C G T
A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:GGATTGGCTG-
--NTTGGCANN
 A C T G T C A G C T G A C G A T A C G T A C T G A C T G G T A C A C G T A T C G A C G T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.72
Offset:3
Orientation:forward strand
Alignment:GGATTGGCTG-
---TWGTCTGV
 A C T G T C A G C T G A C G A T A C G T A C T G A C T G G T A C A C G T A T C G A C G T
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

PB0164.1_Smad3_2/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GGATTGGCTG------
NAGANTGGCGGGGNGNA
 A C G T A C T G T C A G C T G A C G A T A C G T A C T G A C T G G T A C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

Dux/MA0611.1/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GGATTGGCTG
TTGATTGN---
 A C G T A C T G T C A G C T G A C G A T A C G T A C T G A C T G G T A C A C G T A T C G
G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GGATTGGCTG-
BTGABTGACAGS
 A C G T A C T G T C A G C T G A C G A T A C G T A C T G A C T G G T A C A C G T A T C G A C G T
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

NFYA/MA0060.2/Jaspar

Match Rank:10
Score:0.65
Offset:-7
Orientation:forward strand
Alignment:-------GGATTGGCTG-
AGAGTGCTGATTGGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G T C A G C T G A C G A T A C G T A C T G A C T G G T A C A C G T A T C G A C G T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A