Information for 4-VGTCACGTSA (Motif 4)

T A C G T A C G A G C T A T G C C T G A A G T C C T A G A G C T A T G C C T G A
Reverse Opposite:
G A C T A T C G T C G A A G T C C T A G A G C T T A C G T C G A A T G C A T G C
p-value:1e-19
log p-value:-4.408e+01
Information Content per bp:1.654
Number of Target Sequences with motif81.0
Percentage of Target Sequences with motif8.31%
Number of Background Sequences with motif1134.2
Percentage of Background Sequences with motif2.55%
Average Position of motif in Targets53.3 +/- 26.2bp
Average Position of motif in Background48.2 +/- 38.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRE(bZIP)/Promoter/Homer

Match Rank:1
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-VGTCACGTSA-
CGGTGACGTCAC
 A C G T T A C G T A C G A G C T A T G C C T G A A G T C C T A G A G C T A T G C C T G A A C G T
A T G C A T C G T A C G A G C T A T C G C T G A A G T C C T A G A G C T A T G C C T G A A T G C

E-box(bHLH)/Promoter/Homer

Match Rank:2
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--VGTCACGTSA
CCGGTCACGTGA
 A C G T A C G T T A C G T A C G A G C T A T G C C T G A A G T C C T A G A G C T A T G C C T G A
A T G C A T G C A T C G T A C G A G C T A G T C G C T A A G T C T C A G G A C T A C T G T C G A

BHLHE41/MA0636.1/Jaspar

Match Rank:3
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:VGTCACGTSA-
-GTCACGTGAC
 T A C G T A C G A G C T A T G C C T G A A G T C C T A G A G C T A T G C C T G A A C G T
A C G T T C A G C A G T A G T C C G T A A G T C C T A G A G C T A T C G G T C A A G T C

CREB1/MA0018.2/Jaspar

Match Rank:4
Score:0.84
Offset:2
Orientation:reverse strand
Alignment:VGTCACGTSA
--TGACGTCA
 T A C G T A C G A G C T A T G C C T G A A G T C C T A G A G C T A T G C C T G A
A C G T A C G T G C A T A C T G C T G A A G T C A T C G A C G T A T G C T C G A

TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer

Match Rank:5
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-VGTCACGTSA-
BRGTCACGTGAC
 A C G T T A C G T A C G A G C T A T G C C T G A A G T C C T A G A G C T A T G C C T G A A C G T
A C T G C T A G T C A G A G C T T A G C G T C A A G T C T C A G G C A T T A C G T C G A A G T C

SREBF2(var.2)/MA0828.1/Jaspar

Match Rank:6
Score:0.84
Offset:1
Orientation:reverse strand
Alignment:VGTCACGTSA-
-GTCACGTGAT
 T A C G T A C G A G C T A T G C C T G A A G T C C T A G A G C T A T G C C T G A A C G T
A C G T T C A G G C A T T A G C C T G A A T G C T A C G G A C T A T C G C G T A A G C T

Srebf1(var.2)/MA0829.1/Jaspar

Match Rank:7
Score:0.83
Offset:1
Orientation:reverse strand
Alignment:VGTCACGTSA-
-GTCACGTGAT
 T A C G T A C G A G C T A T G C C T G A A G T C C T A G A G C T A T G C C T G A A C G T
A C G T T C A G C G A T A T G C C T G A A T G C T A C G G A C T A C T G C G T A A G C T

PB0007.1_Bhlhb2_1/Jaspar

Match Rank:8
Score:0.82
Offset:-5
Orientation:reverse strand
Alignment:-----VGTCACGTSA-------
NTNNTNGTCACGTGACNNNTNC
 A C G T A C G T A C G T A C G T A C G T T A C G T A C G A G C T A T G C C T G A A G T C C T A G A G C T A T G C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G G C A T C T G A A G C T C A G T T C A G T A C G C A G T G T A C C T G A A G T C T C A G G A C T A C T G G T C A G A T C A G C T T G A C G C A T C G A T G A T C G A T C

Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.82
Offset:2
Orientation:reverse strand
Alignment:VGTCACGTSA--
--TGACGTCATC
 T A C G T A C G A G C T A T G C C T G A A G T C C T A G A G C T A T G C C T G A A C G T A C G T
A C G T A C G T G A C T A C T G C T G A A G T C T C A G G A C T T G A C C T G A A G C T A T G C

Creb5/MA0840.1/Jaspar

Match Rank:10
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:VGTCACGTSA--
NGTGACGTCATN
 T A C G T A C G A G C T A T G C C T G A A G T C C T A G A G C T A T G C C T G A A C G T A C G T
C T A G T C A G C G A T C A T G C G T A A G T C C T A G G C A T G T A C C T G A A G C T A G C T