Information for 20-ACTCTCGCAC (Motif 25)

C G T A G T A C A C G T A G T C A C G T G T A C A C T G A G T C C G T A A G T C
Reverse Opposite:
A C T G C G A T A C T G A G T C A C T G C G T A C T A G G T C A A C T G A C G T
p-value:1e-9
log p-value:-2.094e+01
Information Content per bp:1.838
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif13.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets59.6 +/- 26.6bp
Average Position of motif in Background52.3 +/- 45.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0139.1_Irf5_2/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ACTCTCGCAC--
NNAATTCTCGNTNAN
 A C G T A C G T A C G T C G T A G T A C A C G T A G T C A C G T G T A C A C T G A G T C C G T A A G T C A C G T A C G T
A T C G T A C G C T G A C T G A G A C T G A C T T A G C A G C T A G T C C A T G C T A G G C A T G A T C C G T A T C G A

PB0140.1_Irf6_2/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---ACTCTCGCAC--
ACCACTCTCGGTCAC
 A C G T A C G T A C G T C G T A G T A C A C G T A G T C A C G T G T A C A C T G A G T C C G T A A G T C A C G T A C G T
T G C A A G T C A G T C G C T A G T A C C A G T A T G C A G C T A G T C C T A G T C A G C A G T G A T C C T G A T A G C

PB0138.1_Irf4_2/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ACTCTCGCAC--
AGTATTCTCGGTTGC
 A C G T A C G T A C G T C G T A G T A C A C G T A G T C A C G T G T A C A C T G A G T C C G T A A G T C A C G T A C G T
T C A G T A C G A G C T G C T A G A C T C A G T G A T C A G C T G A T C T C A G T C A G C G A T G A C T C A T G A T G C

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:ACTCTCGCAC---
---TTMACACCTT
 C G T A G T A C A C G T A G T C A C G T G T A C A C T G A G T C C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

TBR1/MA0802.1/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:ACTCTCGCAC--
--TTTCACACCT
 C G T A G T A C A C G T A G T C A C G T G T A C A C T G A G T C C G T A A G T C A C G T A C G T
A C G T A C G T C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T

EOMES/MA0800.1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:ACTCTCGCAC---
NTTTTCACACCTT
 C G T A G T A C A C G T A G T C A C G T G T A C A C T G A G T C C G T A A G T C A C G T A C G T A C G T
C T G A G C A T C A G T C G A T A G C T T G A C C T G A A G T C T C G A T G A C G A T C G A C T G A C T

PB0013.1_Eomes_1/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-ACTCTCGCAC------
NNTTTTCACACCTTNNN
 A C G T C G T A G T A C A C G T A G T C A C G T G T A C A C T G A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C

TBX2/MA0688.1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:ACTCTCGCAC---
--TTTCACACCTN
 C G T A G T A C A C G T A G T C A C G T G T A C A C T G A G T C C G T A A G T C A C G T A C G T A C G T
A C G T A C G T G C A T G C A T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T G C A T

MGA/MA0801.1/Jaspar

Match Rank:9
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:ACTCTCGCAC--
----TCACACCT
 C G T A G T A C A C G T A G T C A C G T G T A C A C T G A G T C C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:ACTCTCGCAC--
TGTCTGDCACCT
 C G T A G T A C A C G T A G T C A C G T G T A C A C T G A G T C C G T A A G T C A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T