Information for 19-GCCGTTTTGT (Motif 24)

A C T G A G T C T A G C A C T G A G C T A G C T A C G T A C G T A C T G A C G T
Reverse Opposite:
C G T A A G T C C G T A C G T A C T G A C T G A T G A C A C T G A C T G A G T C
p-value:1e-9
log p-value:-2.114e+01
Information Content per bp:1.874
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif45.4
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets42.2 +/- 20.8bp
Average Position of motif in Background48.0 +/- 35.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---GCCGTTTTGT
GCNGCCATCTTG-
 A C G T A C G T A C G T A C T G A G T C T A G C A C T G A G C T A G C T A C G T A C G T A C T G A C G T
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GCCGTTTTGT
AGGVNCCTTTGT
 A C G T A C G T A C T G A G T C T A G C A C T G A G C T A G C T A C G T A C G T A C T G A C G T
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GCCGTTTTGT---
---CCTTTGTTTT
 A C T G A G T C T A G C A C T G A G C T A G C T A C G T A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:4
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GCCGTTTTGT---
---CCATTGTTNY
 A C T G A G T C T A G C A C T G A G C T A G C T A C G T A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GCCGTTTTGT-
---CCWTTGTY
 A C T G A G T C T A G C A C T G A G C T A G C T A C G T A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GCCGTTTTGT---
---CCWTTGTYYB
 A C T G A G T C T A G C A C T G A G C T A G C T A C G T A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

SOX10/MA0442.1/Jaspar

Match Rank:7
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GCCGTTTTGT
----CTTTGT
 A C T G A G T C T A G C A C T G A G C T A G C T A C G T A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GCCGTTTTGT-
CCTTGCAATTTTTNN
 A C G T A C G T A C G T A C G T A C T G A G T C T A G C A C T G A G C T A G C T A C G T A C G T A C T G A C G T A C G T
A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C

YY1(Zf)/Promoter/Homer

Match Rank:9
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GCCGTTTTGT
GCCGCCATCTTG-
 A C G T A C G T A C G T A C T G A G T C T A G C A C T G A G C T A G C T A C G T A C G T A C T G A C G T
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:10
Score:0.63
Offset:5
Orientation:forward strand
Alignment:GCCGTTTTGT-
-----ATTGTT
 A C T G A G T C T A G C A C T G A G C T A G C T A C G T A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T