Information for 9-GSCARYVCTASAG (Motif 20)

C T A G T A G C A G T C C G T A C T G A A G C T T G C A A G T C A C G T C T G A T A C G C G T A A T C G
Reverse Opposite:
A T G C C G A T A T G C G A C T G T C A C T A G A C G T C T G A A G C T C G A T C T A G A T C G A G T C
p-value:1e-10
log p-value:-2.377e+01
Information Content per bp:1.670
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif3.09%
Number of Background Sequences with motif173.7
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets51.2 +/- 25.0bp
Average Position of motif in Background50.9 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GSCARYVCTASAG--
AADGAGVCANYASTACAGNC
 A C G T A C G T A C G T A C G T A C G T C T A G T A G C A G T C C G T A C T G A A G C T T G C A A G T C A C G T C T G A T A C G C G T A A T C G A C G T A C G T
G C T A T C G A C G A T C T A G C T G A C A T G T A G C G T A C C T G A C A T G G A T C G C T A T A G C G A C T C T G A A T G C T G C A C T A G C T G A G A T C

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GSCARYVCTASAG
CGTGCCAAG-------
 A C G T A C G T A C G T C T A G T A G C A G T C C G T A C T G A A G C T T G C A A G T C A C G T C T G A T A C G C G T A A T C G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GSCARYVCTASAG
TGCCAA--------
 A C G T C T A G T A G C A G T C C G T A C T G A A G C T T G C A A G T C A C G T C T G A T A C G C G T A A T C G
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0051.1_Osr2_1/Jaspar

Match Rank:4
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GSCARYVCTASAG-----
--CNNNGCTACTGTANNN
 C T A G T A G C A G T C C G T A C T G A A G C T T G C A A G T C A C G T C T G A T A C G C G T A A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C A T G A C G T C G T A A G T C C G T A C G A T

PB0050.1_Osr1_1/Jaspar

Match Rank:5
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GSCARYVCTASAG-----
--TNNTGCTACTGTNNNN
 C T A G T A G C A G T C C G T A C T G A A G C T T G C A A G T C A C G T C T G A T A C G C G T A A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C T A G A C G T C G T A G C T A C G T A C G A T

Sox1/MA0870.1/Jaspar

Match Rank:6
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GSCARYVCTASAG--
AACAATGNTATTGTT
 C T A G T A G C A G T C C G T A C T G A A G C T T G C A A G T C A C G T C T G A T A C G C G T A A T C G A C G T A C G T
T C G A C T G A A G T C C T G A G T C A A C G T T A C G A G C T G C A T C G T A A C G T C A G T A C T G C G A T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:7
Score:0.50
Offset:3
Orientation:forward strand
Alignment:GSCARYVCTASAG
---RSCACTYRAG
 C T A G T A G C A G T C C G T A C T G A A G C T T G C A A G T C A C G T C T G A T A C G C G T A A T C G
A C G T A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--GSCARYVCTASAG
TTGCCAAG-------
 A C G T A C G T C T A G T A G C A G T C C G T A C T G A A G C T T G C A A G T C A C G T C T G A T A C G C G T A A T C G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.50
Offset:3
Orientation:forward strand
Alignment:GSCARYVCTASAG--
---GRTGMTRGAGCC
 C T A G T A G C A G T C C G T A C T G A A G C T T G C A A G T C A C G T C T G A T A C G C G T A A T C G A C G T A C G T
A C G T A C G T A C G T A T C G T C G A G A C T A T C G T G A C A C G T C T A G A C T G C G T A A C T G A G T C G T A C

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--GSCARYVCTASAG
ATGCCAACC------
 A C G T A C G T C T A G T A G C A G T C C G T A C T G A A G C T T G C A A G T C A C G T C T G A T A C G C G T A A T C G
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T