Information for 1-AAAGGGTTTA (Motif 11)

C T G A C G T A G T C A A C T G T A C G C T A G A C G T A C G T A G C T C G T A
Reverse Opposite:
C G A T C T G A C G T A C G T A A G T C A T G C A G T C C A G T C G A T A G C T
p-value:1e-13
log p-value:-3.057e+01
Information Content per bp:1.787
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif2.36%
Number of Background Sequences with motif49.6
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets55.8 +/- 22.8bp
Average Position of motif in Background54.2 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:AAAGGGTTTA
--NGGGATTA
 C T G A C G T A G T C A A C T G T A C G C T A G A C G T A C G T A G C T C G T A
A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A

PH0121.1_Obox1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AAAGGGTTTA-----
TTAAGGGGATTAACTAC
 A C G T A C G T C T G A C G T A G T C A A C T G T A C G C T A G A C G T A C G T A G C T C G T A A C G T A C G T A C G T A C G T A C G T
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C

RXRA::VDR/MA0074.1/Jaspar

Match Rank:3
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----AAAGGGTTTA
GGGTCAACGAGTTCA
 A C G T A C G T A C G T A C G T A C G T C T G A C G T A G T C A A C T G T A C G C T A G A C G T A C G T A G C T C G T A
C T A G A C T G A C T G A C G T A G T C C T G A G C A T A G T C C T A G C T A G A C T G A C G T C G A T A G T C T C G A

PH0137.1_Pitx1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AAAGGGTTTA-----
TTAGAGGGATTAACAAT
 A C G T A C G T C T G A C G T A G T C A A C T G T A C G C T A G A C G T A C G T A G C T C G T A A C G T A C G T A C G T A C G T A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

PITX3/MA0714.1/Jaspar

Match Rank:5
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AAAGGGTTTA--
---GGGATTANN
 C T G A C G T A G T C A A C T G T A C G C T A G A C G T A C G T A G C T C G T A A C G T A C G T
A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

BARHL2/MA0635.1/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AAAGGGTTTA--
--ANCGTTTANN
 C T G A C G T A G T C A A C T G T A C G C T A G A C G T A C G T A G C T C G T A A C G T A C G T
A C G T A C G T C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C

TFCP2/MA0145.3/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AAAGGGTTTA
AAACCGGTTT-
 A C G T C T G A C G T A G T C A A C T G T A C G C T A G A C G T A C G T A G C T C G T A
C T G A C T G A C G T A A T G C G A T C C T A G A T C G G C A T G C A T A G C T A C G T

GRHL1/MA0647.1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AAAGGGTTTA
NAAACCGGTTTT
 A C G T A C G T C T G A C G T A G T C A A C T G T A C G C T A G A C G T A C G T A G C T C G T A
G C T A C G T A C T G A C G T A A T G C G A T C C A T G A C T G G C A T G A C T G C A T C A G T

PH0130.1_Otx2/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AAAGGGTTTA------
TGTAGGGATTAATTGTC
 A C G T C T G A C G T A G T C A A C T G T A C G C T A G A C G T A C G T A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

Crx/MA0467.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AAAGGGTTTA-
AAGAGGATTAG
 C T G A C G T A G T C A A C T G T A C G C T A G A C G T A C G T A G C T C G T A A C G T
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G