Information for 6-CCCAGTAGGA (Motif 27)

A T G C A G T C A G T C C G T A A C T G A C G T C G T A A C T G A C T G G T C A
Reverse Opposite:
A C G T A G T C A G T C A C G T C G T A A G T C A C G T A C T G A C T G A T C G
p-value:1e-8
log p-value:-1.903e+01
Information Content per bp:1.938
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif8.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets47.7 +/- 24.5bp
Average Position of motif in Background64.6 +/- 13.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---CCCAGTAGGA--
CCACACAGCAGGAGA
 A C G T A C G T A C G T A T G C A G T C A G T C C G T A A C T G A C G T C G T A A C T G A C T G G T C A A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---CCCAGTAGGA--
CCACACAGCAGGAGA
 A C G T A C G T A C G T A T G C A G T C A G T C C G T A A C T G A C G T C G T A A C T G A C T G G T C A A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CCCAGTAGGA--
CACAGCAGGGGG
 A T G C A G T C A G T C C G T A A C T G A C G T C G T A A C T G A C T G G T C A A C G T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---CCCAGTAGGA--
GAGCACAGCAGGACA
 A C G T A C G T A C G T A T G C A G T C A G T C C G T A A C T G A C G T C G T A A C T G A C T G G T C A A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGTAGGA----
DCHCAGCAGGRGGCC
 A C G T A T G C A G T C A G T C C G T A A C T G A C G T C G T A A C T G A C T G G T C A A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGTAGGA
DCTCAGCAGG-
 A C G T A T G C A G T C A G T C C G T A A C T G A C G T C G T A A C T G A C T G G T C A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

PB0050.1_Osr1_1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CCCAGTAGGA---
ATTTACAGTAGCAAAA
 A C G T A C G T A C G T A T G C A G T C A G T C C G T A A C T G A C G T C G T A A C T G A C T G G T C A A C G T A C G T A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

PB0181.1_Spdef_2/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CCCAGTAGGA-------
-CTACTAGGATGTNNTN
 A T G C A G T C A G T C C G T A A C T G A C G T C G T A A C T G A C T G G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C

PB0051.1_Osr2_1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CCCAGTAGGA---
ATGTACAGTAGCAAAG
 A C G T A C G T A C G T A T G C A G T C A G T C C G T A A C T G A C G T C G T A A C T G A C T G G T C A A C G T A C G T A C G T
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCCAGTAGGA
TGCCCAGNHW--
 A C G T A C G T A T G C A G T C A G T C C G T A A C T G A C G T C G T A A C T G A C T G G T C A
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T