Information for 5-RTGCAGCARKRTC (Motif 16)

C T G A A C G T A C T G A G T C C G T A A C T G A G T C C G T A C T A G A C G T C T A G A C G T A G T C
Reverse Opposite:
A C T G C G T A A G T C G T C A A G T C A C G T A C T G A G T C A C G T A C T G T A G C G T C A A G C T
p-value:1e-10
log p-value:-2.485e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.5 +/- 20.3bp
Average Position of motif in Background44.0 +/- 9.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MAFK/MA0496.1/Jaspar

Match Rank:1
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---RTGCAGCARKRTC
CTGAGTCAGCAATTT-
 A C G T A C G T A C G T C T G A A C G T A C T G A G T C C G T A A C T G A G T C C G T A C T A G A C G T C T A G A C G T A G T C
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:2
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-RTGCAGCARKRTC-
ADGGYAGYAGCATCT
 A C G T C T G A A C G T A C T G A G T C C G T A A C T G A G T C C G T A C T A G A C G T C T A G A C G T A G T C A C G T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-RTGCAGCARKRTC
NATGTTGCAA----
 A C G T C T G A A C G T A C T G A G T C C G T A A C T G A G T C C G T A C T A G A C G T C T A G A C G T A G T C
C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.56
Offset:3
Orientation:forward strand
Alignment:RTGCAGCARKRTC
---CAGCC-----
 C T G A A C G T A C T G A G T C C G T A A C T G A G T C C G T A C T A G A C G T C T A G A C G T A G T C
A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

MAFF/MA0495.1/Jaspar

Match Rank:5
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----RTGCAGCARKRTC-
GCTGAGTCAGCAATTTTT
 A C G T A C G T A C G T A C G T C T G A A C G T A C T G A G T C C G T A A C T G A G T C C G T A C T A G A C G T C T A G A C G T A G T C A C G T
A T C G G T A C G C A T C T A G C G T A T A C G G C A T G T A C C G T A C A T G A G T C C G T A C G T A G C A T G C A T G C A T G A C T G C A T

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:6
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:RTGCAGCARKRTC
--GCAGCTGTNN-
 C T G A A C G T A C T G A G T C C G T A A C T G A G T C C G T A C T A G A C G T C T A G A C G T A G T C
A C G T A C G T T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C T G G C A T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--RTGCAGCARKRTC
GAGCACAGCAGGACA
 A C G T A C G T C T G A A C G T A C T G A G T C C G T A A C T G A G T C C G T A C T A G A C G T C T A G A C G T A G T C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0091.1_Zbtb3_1/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----RTGCAGCARKRTC
NNNANTGCAGTGCNNTT
 A C G T A C G T A C G T A C G T C T G A A C G T A C T G A G T C C G T A A C T G A G T C C G T A C T A G A C G T C T A G A C G T A G T C
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--RTGCAGCARKRTC
HWWGTCAGCAWWTTT
 A C G T A C G T C T G A A C G T A C T G A G T C C G T A A C T G A G T C C G T A C T A G A C G T C T A G A C G T A G T C
G T A C C G T A C G T A T A C G G C A T G T A C C G T A C A T G A G T C C G T A C G T A C G A T G C A T G C A T G A C T

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-RTGCAGCARKRTC
ATTGCATCAK----
 A C G T C T G A A C G T A C T G A G T C C G T A A C T G A G T C C G T A C T A G A C G T C T A G A C G T A G T C
T C G A A C G T A C G T C T A G A G T C T C G A G C A T G T A C C T G A A C G T A C G T A C G T A C G T A C G T