Information for 7-CCGCGGCACCGAA (Motif 7)

A G T C A G T C A C T G A G T C C T A G A C T G A G T C C G T A A G T C A G T C A C T G C G T A G T C A
Reverse Opposite:
A C G T A C G T G T A C A C T G A C T G A C G T A C T G A G T C A G T C A C T G A G T C A C T G A C T G
p-value:1e-10
log p-value:-2.433e+01
Information Content per bp:1.924
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.8 +/- 18.2bp
Average Position of motif in Background25.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCGCGGCACCGAA----
-CGAAGCACACAAAATA
 A G T C A G T C A C T G A G T C C T A G A C T G A G T C C G T A A G T C A G T C A C T G C G T A G T C A A C G T A C G T A C G T A C G T
A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

POL011.1_XCPE1/Jaspar

Match Rank:2
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCGCGGCACCGAA
GGGCGGGACC---
 A G T C A G T C A C T G A G T C C T A G A C T G A G T C C G T A A G T C A G T C A C T G C G T A G T C A
A C T G A T C G A C T G A G T C A C T G A C T G C T A G C G T A A T G C G T A C A C G T A C G T A C G T

PB0117.1_Eomes_2/Jaspar

Match Rank:3
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CCGCGGCACCGAA--
NNGGCGACACCTCNNN
 A C G T A G T C A G T C A C T G A G T C C T A G A C T G A G T C C G T A A G T C A G T C A C T G C G T A G T C A A C G T A C G T
A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CCGCGGCACCGAA
--GCCACACCCA-
 A G T C A G T C A C T G A G T C C T A G A C T G A G T C C G T A A G T C A G T C A C T G C G T A G T C A
A C G T A C G T C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:5
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CCGCGGCACCGAA---
CCTTCGGCGCCAAAAGG
 A C G T A G T C A G T C A C T G A G T C C T A G A C T G A G T C C G T A A G T C A G T C A C T G C G T A G T C A A C G T A C G T A C G T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

CREB3/MA0638.1/Jaspar

Match Rank:6
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CCGCGGCACCGAA
GTGCCACGTCATCA--
 A C G T A C G T A C G T A G T C A G T C A C T G A G T C C T A G A C T G A G T C C G T A A G T C A G T C A C T G C G T A G T C A
T C A G A G C T C A T G G T A C A T G C C G T A A G T C C T A G G A C T T G A C C T G A A G C T G T A C T C G A A C G T A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:7
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CCGCGGCACCGAA---
AGCTCGGCGCCAAAAGC
 A C G T A G T C A G T C A C T G A G T C C T A G A C T G A G T C C G T A A G T C A G T C A C T G C G T A G T C A A C G T A C G T A C G T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

PB0055.1_Rfx4_1/Jaspar

Match Rank:8
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--CCGCGGCACCGAA
TACCATAGCAACGGT
 A C G T A C G T A G T C A G T C A C T G A G T C C T A G A C T G A G T C C G T A A G T C A G T C A C T G C G T A G T C A
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

POL013.1_MED-1/Jaspar

Match Rank:9
Score:0.51
Offset:5
Orientation:forward strand
Alignment:CCGCGGCACCGAA
-----GCTCCG--
 A G T C A G T C A C T G A G T C C T A G A C T G A G T C C G T A A G T C A G T C A C T G C G T A G T C A
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:10
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----CCGCGGCACCGAA
GTTGCCATGGCAAC---
 A C G T A C G T A C G T A C G T A G T C A G T C A C T G A G T C C T A G A C T G A G T C C G T A A G T C A G T C A C T G C G T A G T C A
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T A C G T