Information for 11-CTGCTTGCCGTGG (Motif 16)

A T G C A C G T A C T G A T G C A C G T A C G T A C T G A G T C A G T C A T C G A G C T A C T G A C T G
Reverse Opposite:
G T A C A G T C C T G A A T G C C T A G A C T G A G T C G T C A C G T A A T C G A G T C C G T A A T C G
p-value:1e-8
log p-value:-2.064e+01
Information Content per bp:1.879
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif9.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets52.3 +/- 22.6bp
Average Position of motif in Background49.0 +/- 18.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1/MA0509.1/Jaspar

Match Rank:1
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CTGCTTGCCGTGG----
---GTTGCCATGGNAAC
 A T G C A C G T A C T G A T G C A C G T A C G T A C T G A G T C A G T C A T C G A G C T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CTGCTTGCCGTGG---
--NGTTGCCATGGCAA
 A T G C A C G T A C T G A T G C A C G T A C G T A C T G A G T C A G T C A T C G A G C T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTGCTTGCCGTGG--
NNCGTTGCTATGGNN
 A T G C A C G T A C T G A T G C A C G T A C G T A C T G A G T C A G T C A T C G A G C T A C T G A C T G A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTGCTTGCCGTGG---
--GGTTGCCATGGCAA
 A T G C A C G T A C T G A T G C A C G T A C G T A C T G A G T C A G T C A T C G A G C T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTGCTTGCCGTGG---
NSTGTTTRCWCAGBNNN
 A C G T A T G C A C G T A C T G A T G C A C G T A C G T A C T G A G T C A G T C A T C G A G C T A C T G A C T G A C G T A C G T A C G T
G A C T A T G C A C G T C T A G C G A T C A G T C A G T T C G A G A T C G C T A A G T C C G T A T C A G A T G C T A G C G A C T T A C G

PB0054.1_Rfx3_1/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTTGCCGTGG------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A T G C A C G T A C T G A T G C A C G T A C G T A C T G A G T C A G T C A T C G A G C T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CTGCTTGCCGTGG----
--KGTTGCCATGGCAAC
 A T G C A C G T A C T G A T G C A C G T A C G T A C T G A G T C A G T C A T C G A G C T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CTGCTTGCCGTGG--
NNTGTTTATTTTGGCA
 A C G T A T G C A C G T A C T G A T G C A C G T A C G T A C T G A G T C A G T C A T C G A G C T A C T G A C T G A C G T A C G T
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTGCTTGCCGTGG
CTGTTTAC-----
 A T G C A C G T A C T G A T G C A C G T A C G T A C T G A G T C A G T C A T C G A G C T A C T G A C T G
A G T C A C G T A C T G A G C T A C G T A C G T G T C A A G T C A C G T A C G T A C G T A C G T A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CTGCTTGCCGTGG----
-CGGTTGCCATGGCAAC
 A T G C A C G T A C T G A T G C A C G T A C G T A C T G A G T C A G T C A T C G A G C T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C