Information for 1-CTCAGGSATAGCT (Motif 2)

A G T C C G A T A T G C G C T A C A T G A C T G T A C G G T C A A G C T C T G A A T C G A G T C A C G T
Reverse Opposite:
C G T A A C T G T A G C G A C T C T G A A C G T A T G C T A G C G T A C C G A T A T C G C G T A A C T G
p-value:1e-14
log p-value:-3.406e+01
Information Content per bp:1.730
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.69%
Number of Background Sequences with motif64.3
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets59.1 +/- 20.9bp
Average Position of motif in Background47.2 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTCAGGSATAGCT--
GTCATGCHTGRCTGS
 A G T C C G A T A T G C G C T A C A T G A C T G T A C G G T C A A G C T C T G A A T C G A G T C A C G T A C G T A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.55
Offset:9
Orientation:reverse strand
Alignment:CTCAGGSATAGCT-
---------NGCTN
 A G T C C G A T A T G C G C T A C A T G A C T G T A C G G T C A A G C T C T G A A T C G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CTCAGGSATAGCT--
NGTCACGCTTGGCTGC
 A C G T A G T C C G A T A T G C G C T A C A T G A C T G T A C G G T C A A G C T C T G A A T C G A G T C A C G T A C G T A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:4
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----CTCAGGSATAGCT
NTNGCCTCAGGCNNN---
 A C G T A C G T A C G T A C G T A C G T A G T C C G A T A T G C G C T A C A T G A C T G T A C G G T C A A G C T C T G A A T C G A G T C A C G T
G C T A C A G T G A C T A T C G A G T C A G T C A G C T T A G C T C G A T C A G A C T G T A G C C G T A C G T A C G A T A C G T A C G T A C G T

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:5
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CTCAGGSATAGCT
SCCTSAGGSCAW---
 A C G T A C G T A G T C C G A T A T G C G C T A C A T G A C T G T A C G G T C A A G C T C T G A A T C G A G T C A C G T
A T C G A G T C A G T C G A C T A T G C C T G A C T A G A C T G T A C G G T A C C T G A C G A T A C G T A C G T A C G T

PB0087.1_Tcfap2c_1/Jaspar

Match Rank:6
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----CTCAGGSATAGCT
NTCGCCTCAGGCAAT---
 A C G T A C G T A C G T A C G T A C G T A G T C C G A T A T G C G C T A C A T G A C T G T A C G G T C A A G C T C T G A A T C G A G T C A C G T
G C A T C G A T G A T C A T C G G T A C A G T C A G C T T A G C T C G A C T A G A C T G T A G C C T G A C G T A C G A T A C G T A C G T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--CTCAGGSATAGCT
GCCTCAGGGCAT---
 A C G T A C G T A G T C C G A T A T G C G C T A C A T G A C T G T A C G G T C A A G C T C T G A A T C G A G T C A C G T
A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T A C G T A C G T A C G T

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:8
Score:0.51
Offset:-5
Orientation:reverse strand
Alignment:-----CTCAGGSATAGCT
NTCCCCTCAGGGANT---
 A C G T A C G T A C G T A C G T A C G T A G T C C G A T A T G C G C T A C A T G A C T G T A C G G T C A A G C T C T G A A T C G A G T C A C G T
G A C T C G A T G A T C A T G C G T A C A G T C A G C T T A G C T C G A C T A G A C T G T A C G C G T A G C T A G C A T A C G T A C G T A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:9
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CTCAGGSATAGCT
CGCCTCAGGCA-----
 A C G T A C G T A C G T A G T C C G A T A T G C G C T A C A T G A C T G T A C G G T C A A G C T C T G A A T C G A G T C A C G T
G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A A C G T A C G T A C G T A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:10
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CTCAGGSATAGCT
AGCCTCAGGCA-----
 A C G T A C G T A C G T A G T C C G A T A T G C G C T A C A T G A C T G T A C G G T C A A G C T C T G A A T C G A G T C A C G T
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T A C G T A C G T A C G T A C G T