Information for 5-GCAGCAGAGACTC (Motif 8)

A C T G A G T C C G T A A T C G A G T C G T C A T A C G G C T A A C T G C T G A A G T C A C G T A G T C
Reverse Opposite:
A C T G T G C A C T A G A G C T A G T C C A G T A G T C A C G T A C T G A T G C A C G T A C T G A G T C
p-value:1e-10
log p-value:-2.364e+01
Information Content per bp:1.789
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.45%
Number of Background Sequences with motif59.1
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets59.9 +/- 28.3bp
Average Position of motif in Background44.5 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCAGCAGAGACTC--
AGCGGCACACACGCAA
 A C G T A C T G A G T C C G T A A T C G A G T C G T C A T A C G G C T A A C T G C T G A A G T C A C G T A G T C A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

NHLH1/MA0048.2/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCAGAGACTC
CGCAGCTGCG----
 A C G T A C T G A G T C C G T A A T C G A G T C G T C A T A C G G C T A A C T G C T G A A G T C A C G T A G T C
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCAGCAGAGACTC
CACAGCAGGGGG--
 A C G T A C T G A G T C C G T A A T C G A G T C G T C A T A C G G C T A A C T G C T G A A G T C A C G T A G T C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCAGCAGAGACTC
ANCAGCTG------
 A C G T A C T G A G T C C G T A A T C G A G T C G T C A T A C G G C T A A C T G C T G A A G T C A C G T A G T C
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T A C G T A C G T A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GCAGCAGAGACTC
---GCAGTGATTT
 A C T G A G T C C G T A A T C G A G T C G T C A T A C G G C T A A C T G C T G A A G T C A C G T A G T C
A C G T A C G T A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GCAGCAGAGACTC
DCHCAGCAGGRGGCC
 A C G T A C G T A C T G A G T C C G T A A T C G A G T C G T C A T A C G G C T A A C T G C T G A A G T C A C G T A G T C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCAGCAGAGACTC
-CAGCC-------
 A C T G A G T C C G T A A T C G A G T C G T C A T A C G G C T A A C T G C T G A A G T C A C G T A G T C
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----GCAGCAGAGACTC
TGAGTCAGCA-------
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A T C G A G T C G T C A T A C G G C T A A C T G C T G A A G T C A C G T A G T C
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCAGAGACTC
GTCAGCANNTN---
 A C G T A C T G A G T C C G T A A T C G A G T C G T C A T A C G G C T A A C T G C T G A A G T C A C G T A G T C
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T A C G T A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GCAGCAGAGACTC-------
---TACGAGACTCCTCTAAC
 A C T G A G T C C G T A A T C G A G T C G T C A T A C G G C T A A C T G C T G A A G T C A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C