Information for 1-GACATGCATG (Motif 7)

C T A G G T C A A G T C G T C A A C G T A C T G T A G C G C T A A C G T A C T G
Reverse Opposite:
A G T C G T C A C A G T A C T G A G T C C G T A A C G T C T A G A C G T A G T C
p-value:1e-14
log p-value:-3.306e+01
Information Content per bp:1.847
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.26%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets50.7 +/- 25.1bp
Average Position of motif in Background76.7 +/- 11.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---GACATGCATG-
NNTNTCATGAATGT
 A C G T A C G T A C G T C T A G G T C A A G T C G T C A A C G T A C T G T A G C G C T A A C G T A C T G A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GACATGCATG-----
GTCATGCHTGRCTGS
 C T A G G T C A A G T C G T C A A C G T A C T G T A G C G C T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GACATGCATG-----
NTTNTATGAATGTGNNC
 A C G T A C G T C T A G G T C A A G T C G T C A A C G T A C T G T A G C G C T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GACATGCATG-----
NGTCACGCTTGGCTGC
 A C G T C T A G G T C A A G T C G T C A A C G T A C T G T A G C G C T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

PAX1/MA0779.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GACATGCATG------
CGTCACGCATGACTGCA
 A C G T C T A G G T C A A G T C G T C A A C G T A C T G T A G C G C T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GACATGCATG
NNACTTGCCTT
 A C G T C T A G G T C A A G T C G T C A A C G T A C T G T A G C G C T A A C G T A C T G
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GACATGCATG
GHATATKCAT-
 A C G T C T A G G T C A A G T C G T C A A C G T A C T G T A G C G C T A A C G T A C T G
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T

PH0086.1_Irx5/Jaspar

Match Rank:8
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GACATGCATG--
ANTNNTACATGTANNTN
 A C G T A C G T A C G T A C G T A C G T C T A G G T C A A G T C G T C A A C G T A C T G T A G C G C T A A C G T A C T G A C G T A C G T
G C T A G T C A G C A T G C A T C A G T C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A C G A T G C T A G C A T G C A T

PH0082.1_Irx2/Jaspar

Match Rank:9
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GACATGCATG--
ANTNTTACATGTATNTA
 A C G T A C G T A C G T A C G T A C G T C T A G G T C A A G T C G T C A A C G T A C T G T A G C G C T A A C G T A C T G A C G T A C G T
C G T A T G C A G C A T G A C T G A C T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A G A C T G C A T C G A T G C T A

PAX9/MA0781.1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GACATGCATG------
CGTCACGCATGACTGCA
 A C G T C T A G G T C A A G T C G T C A A C G T A C T G T A G C G C T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A