Information for 9-GGCCAAGAGTACAACT (Motif 17)

C A T G C T A G T A G C G T A C G T C A C G T A C T A G G T C A C T A G C A G T T G C A A G T C C G T A T C G A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T G A C T A C T G A C G T G C T A G A T C A C G T A G T C A C G T C A G T A C T G A C T G A G T C G T A C
p-value:1e-10
log p-value:-2.531e+01
Information Content per bp:1.691
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif11.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets46.1 +/- 27.5bp
Average Position of motif in Background40.7 +/- 22.8bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GGCCAAGAGTACAACT
GGTGCCAAGT--------
 A C G T A C G T C A T G C T A G T A G C G T A C G T C A C G T A C T A G G T C A C T A G C A G T T G C A A G T C C G T A T C G A A G T C A C G T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GGCCAAGAGTACAACT
CGTGCCAAG---------
 A C G T A C G T C A T G C T A G T A G C G T A C G T C A C G T A C T A G G T C A C T A G C A G T T G C A A G T C C G T A T C G A A G T C A C G T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Rarg/MA0859.1/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GGCCAAGAGTACAACT
AAGGTCAAAAGGTCAA--
 A C G T A C G T C A T G C T A G T A G C G T A C G T C A C G T A C T A G G T C A C T A G C A G T T G C A A G T C C G T A T C G A A G T C A C G T
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGCCAAGAGTACAACT
TGCCAA----------
 C A T G C T A G T A G C G T A C G T C A C G T A C T A G G T C A C T A G C A G T T G C A A G T C C G T A T C G A A G T C A C G T
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GGCCAAGAGTACAACT
GAGGTCAAAAGGTCA---
 A C G T A C G T C A T G C T A G T A G C G T A C G T C A C G T A C T A G G T C A C T A G C A G T T G C A A G T C C G T A T C G A A G T C A C G T
T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A A C G T A C G T A C G T

Rarb/MA0857.1/Jaspar

Match Rank:6
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GGCCAAGAGTACAACT
AAAGGTCAAAAGGTCA---
 A C G T A C G T A C G T C A T G C T A G T A G C G T A C G T C A C G T A C T A G G T C A C T A G C A G T T G C A A G T C C G T A T C G A A G T C A C G T
G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GGCCAAGAGTACAACT
TTGCCAAG---------
 A C G T C A T G C T A G T A G C G T A C G T C A C G T A C T A G G T C A C T A G C A G T T G C A A G T C C G T A T C G A A G T C A C G T
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:8
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GGCCAAGAGTACAACT-
-GGCAAAAGTCCAATAA
 C A T G C T A G T A G C G T A C G T C A C G T A C T A G G T C A C T A G C A G T T G C A A G T C C G T A T C G A A G T C A C G T A C G T
A C G T A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:9
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---GGCCAAGAGTACAACT
CANAGNNCAAAGTCCA---
 A C G T A C G T A C G T C A T G C T A G T A G C G T A C G T C A C G T A C T A G G T C A C T A G C A G T T G C A A G T C C G T A T C G A A G T C A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GGCCAAGAGTACAACT-
GGGRAARRGRMCAGMTG
 C A T G C T A G T A G C G T A C G T C A C G T A C T A G G T C A C T A G C A G T T G C A A G T C C G T A T C G A A G T C A C G T A C G T
C A T G A C T G C T A G T C G A T C G A T C G A T C G A T C A G T C A G T C A G T G A C T G A C C G T A A C T G T G C A C G A T A C T G