Information for 6-CGKGAKCTTGCYGTCC (Motif 12)

G T A C A C T G A C T G T A C G C T G A A C T G A G T C A C G T A C G T C T A G A G T C A G T C A C T G A C G T A G T C G A T C
Reverse Opposite:
C A T G T C A G T G C A T G A C T C A G A C T G A G T C T G C A T C G A T A C G T G A C G A C T A T G C T G A C T G A C C A T G
p-value:1e-8
log p-value:-2.067e+01
Information Content per bp:1.637
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif3.20%
Number of Background Sequences with motif36.7
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets53.4 +/- 32.5bp
Average Position of motif in Background53.6 +/- 22.5bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CGKGAKCTTGCYGTCC
-GTGACCTT-------
 G T A C A C T G A C T G T A C G C T G A A C T G A G T C A C G T A C G T C T A G A G T C A G T C A C T G A C G T A G T C G A T C
A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CGKGAKCTTGCYGTCC--
---NNTCCTGCTGTGNNN
 G T A C A C T G A C T G T A C G C T G A A C T G A G T C A C G T A C G T C T A G A G T C A G T C A C T G A C G T A G T C G A T C A C G T A C G T
A C G T A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.50
Offset:9
Orientation:forward strand
Alignment:CGKGAKCTTGCYGTCC
---------GCTGTG-
 G T A C A C T G A C T G T A C G C T G A A C T G A G T C A C G T A C G T C T A G A G T C A G T C A C T G A C G T A G T C G A T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.50
Offset:1
Orientation:forward strand
Alignment:CGKGAKCTTGCYGTCC
-NTGACCTTGA-----
 G T A C A C T G A C T G T A C G C T G A A C T G A G T C A C G T A C G T C T A G A G T C A G T C A C T G A C G T A G T C G A T C
A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.50
Offset:6
Orientation:forward strand
Alignment:CGKGAKCTTGCYGTCC
------CCTGCTGAGH
 G T A C A C T G A C T G T A C G C T G A A C T G A G T C A C G T A C G T C T A G A G T C A G T C A C T G A C G T A G T C G A T C
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:CGKGAKCTTGCYGTCC
-CGGAGC---------
 G T A C A C T G A C T G T A C G C T G A A C T G A G T C A C G T A C G T C T A G A G T C A G T C A C T G A C G T A G T C G A T C
A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:7
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---CGKGAKCTTGCYGTCC
NNNNATGACCTTGANTN--
 A C G T A C G T A C G T G T A C A C T G A C T G T A C G C T G A A C T G A G T C A C G T A C G T C T A G A G T C A G T C A C T G A C G T A G T C G A T C
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:8
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:CGKGAKCTTGCYGTCC
BNTGDCCTTG------
 G T A C A C T G A C T G T A C G C T G A A C T G A G T C A C G T A C G T C T A G A G T C A G T C A C T G A C G T A G T C G A T C
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:9
Score:0.49
Offset:1
Orientation:forward strand
Alignment:CGKGAKCTTGCYGTCC
-VAGRACAKNCTGTBC
 G T A C A C T G A C T G T A C G C T G A A C T G A G T C A C G T A C G T C T A G A G T C A G T C A C T G A C G T A G T C G A T C
A C G T T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.48
Offset:2
Orientation:forward strand
Alignment:CGKGAKCTTGCYGTCC--
--AGNACAGNCTGTTCTN
 G T A C A C T G A C T G T A C G C T G A A C T G A G T C A C G T A C G T C T A G A G T C A G T C A C T G A C G T A G T C G A T C A C G T A C G T
A C G T A C G T C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T