Information for 10-GGTGAGAAAG (Motif 19)

A T C G C A T G A G C T A T C G C T G A T C A G C G T A T G C A T G C A C A T G
Reverse Opposite:
G T A C A C G T A C G T C G A T A G T C A G C T A T G C T C G A G T A C A T G C
p-value:1e-9
log p-value:-2.198e+01
Information Content per bp:1.822
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.31%
Number of Background Sequences with motif347.3
Percentage of Background Sequences with motif0.79%
Average Position of motif in Targets54.0 +/- 23.5bp
Average Position of motif in Background46.7 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBR1/MA0802.1/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GGTGAGAAAG
AGGTGTGAAA-
 A C G T A T C G C A T G A G C T A T C G C T G A T C A G C G T A T G C A T G C A C A T G
C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A A C G T

PB0013.1_Eomes_1/Jaspar

Match Rank:2
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----GGTGAGAAAG--
GAAAAGGTGTGAAAATT
 A C G T A C G T A C G T A C G T A C G T A T C G C A T G A G C T A T C G C T G A T C A G C G T A T G C A T G C A C A T G A C G T A C G T
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T

TBX2/MA0688.1/Jaspar

Match Rank:3
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GGTGAGAAAG
AAGGTGTGAAA-
 A C G T A C G T A T C G C A T G A G C T A T C G C T G A T C A G C G T A T G C A T G C A C A T G
C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:4
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GGTGAGAAAG
AGGTGTGAAM-
 A C G T A T C G C A T G A G C T A T C G C T G A T C A G C G T A T G C A T G C A C A T G
C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A A C G T

EOMES/MA0800.1/Jaspar

Match Rank:5
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GGTGAGAAAG-
AAGGTGTGAAAAT
 A C G T A C G T A T C G C A T G A G C T A T C G C T G A T C A G C G T A T G C A T G C A C A T G A C G T
C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:6
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GGTGAGAAAG
AGGTGTTAAT-
 A C G T A T C G C A T G A G C T A T C G C T G A T C A G C G T A T G C A T G C A C A T G
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GGTGAGAAAG
CSTGGGAAAD
 A T C G C A T G A G C T A T C G C T G A T C A G C G T A T G C A T G C A C A T G
A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A

TBX21/MA0690.1/Jaspar

Match Rank:8
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GGTGAGAAAG
AAGGTGTGAA--
 A C G T A C G T A T C G C A T G A G C T A T C G C T G A T C A G C G T A T G C A T G C A C A T G
C T G A C T G A C T A G A C T G A G C T C A T G G A C T A C T G C T G A G C T A A C G T A C G T

TBX20/MA0689.1/Jaspar

Match Rank:9
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GGTGAGAAAG
TAGGTGTGAAG-
 A C G T A C G T A T C G C A T G A G C T A T C G C T G A T C A G C G T A T G C A T G C A C A T G
C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:10
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GGTGAGAAAG
AAGGTGTKAA--
 A C G T A C G T A T C G C A T G A G C T A T C G C T G A T C A G C G T A T G C A T G C A C A T G
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T