Information for 3-AGTGACATCTAGC (Motif 3)

C T G A A T C G A C G T A C T G G T C A A G T C G T C A C G A T A G T C C G A T C G T A A C T G A T G C
Reverse Opposite:
A T C G G T A C C G A T C G T A A C T G C G T A A C G T A C T G A C G T A G T C C G T A A T G C A G C T
p-value:1e-15
log p-value:-3.572e+01
Information Content per bp:1.901
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.4 +/- 20.0bp
Average Position of motif in Background60.7 +/- 20.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:1
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AGTGACATCTAGC
--TGTCANYT---
 C T G A A T C G A C G T A C T G G T C A A G T C G T C A C G A T A G T C C G A T C G T A A C T G A T G C
A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AGTGACATCTAGC
--TGACCYCT---
 C T G A A T C G A C G T A C T G G T C A A G T C G T C A C G A T A G T C C G A T C G T A A C T G A T G C
A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AGTGACATCTAGC-
GATATTGACAGCTGCGT
 A C G T A C G T A C G T C T G A A T C G A C G T A C T G G T C A A G T C G T C A C G A T A G T C C G A T C G T A A C T G A T G C A C G T
C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T

PB0118.1_Esrra_2/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AGTGACATCTAGC-
NNNNTTGACCCCTNNNN
 A C G T A C G T A C G T C T G A A T C G A C G T A C T G G T C A A G T C G T C A C G A T A G T C C G A T C G T A A C T G A T G C A C G T
C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGTGACATCTAGC---
CCNNACCATCTGGCCTN
 A C G T C T G A A T C G A C G T A C T G G T C A A G T C G T C A C G A T A G T C C G A T C G T A A C T G A T G C A C G T A C G T A C G T
A G T C T A G C T A C G C T A G T C G A G T A C A G T C C G T A A G C T T G A C A G C T C A T G A T C G G T A C G A T C A G C T C A G T

PH0170.1_Tgif2/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGTGACATCTAGC-
GTATTGACAGCTNNTT
 A C G T A C G T C T G A A T C G A C G T A C T G G T C A A G T C G T C A C G A T A G T C C G A T C G T A A C T G A T G C A C G T
A C T G A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C A T G T A G C G A C T T C G A T A C G G C A T C G A T

PB0126.1_Gata5_2/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGTGACATCTAGC--
NNNCTGATATCTCNNNN
 A C G T A C G T C T G A A T C G A C G T A C T G G T C A A G T C G T C A C G A T A G T C C G A T C G T A A C T G A T G C A C G T A C G T
T G C A T G A C C T G A G A T C G C A T C T A G G T C A C A G T G T C A A C G T G T A C C A G T G A T C C A G T T A C G A C G T A G T C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGTGACATCTAGC-----
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T C T G A A T C G A C G T A C T G G T C A A G T C G T C A C G A T A G T C C G A T C G T A A C T G A T G C A C G T A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PKNOX1/MA0782.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AGTGACATCTAGC-
--TGACACCTGTCA
 C T G A A T C G A C G T A C T G G T C A A G T C G T C A C G A T A G T C C G A T C G T A A C T G A T G C A C G T
A C G T A C G T G C A T A T C G C G T A A G T C T C G A A T G C G T A C G A C T C A T G G A C T A T G C C T G A

TGIF2/MA0797.1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AGTGACATCTAGC-
--TGACAGCTGTCA
 C T G A A T C G A C G T A C T G G T C A A G T C G T C A C G A T A G T C C G A T C G T A A C T G A T G C A C G T
A C G T A C G T G C A T T A C G C T G A G A T C C T G A A T C G G T A C G A C T C T A G G A C T G A T C C G T A