Information for 17-AGTTGAGTGCCAG (Motif 31)

C G T A A C T G A C G T A C G T A C T G C G T A A T C G A C G T A C T G A G T C A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C T G A G T C C G T A A T G C A C G T A G T C C G T A C G T A A G T C C G A T
p-value:1e-7
log p-value:-1.749e+01
Information Content per bp:1.952
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets72.5 +/- 23.8bp
Average Position of motif in Background51.3 +/- 13.3bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:AGTTGAGTGCCAG-
--NTGATTGACAGN
 C G T A A C T G A C G T A C G T A C T G C G T A A T C G A C G T A C T G A G T C A G T C C G T A A C T G A C G T
A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:AGTTGAGTGCCAG-
--BTGABTGACAGS
 C G T A A C T G A C G T A C G T A C T G C G T A A T C G A C G T A C T G A G T C A G T C C G T A A C T G A C G T
A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:AGTTGAGTGCCAG--
---TGAGTGACAGSC
 C G T A A C T G A C G T A C G T A C T G C G T A A T C G A C G T A C T G A G T C A G T C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:AGTTGAGTGCCAG
-CTTGAGTGGCT-
 C G T A A C T G A C G T A C G T A C T G C G T A A T C G A C G T A C T G A G T C A G T C C G T A A C T G
A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AGTTGAGTGCCAG
-BTBRAGTGSN--
 C G T A A C T G A C G T A C G T A C T G C G T A A T C G A C G T A C T G A G T C A G T C C G T A A C T G
A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AGTTGAGTGCCAG
-CTYRAGTGSY--
 C G T A A C T G A C G T A C G T A C T G C G T A A T C G A C G T A C T G A G T C A G T C C G T A A C T G
A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AGTTGAGTGCCAG
--TTGAGTGSTT-
 C G T A A C T G A C G T A C G T A C T G C G T A A T C G A C G T A C T G A G T C A G T C C G T A A C T G
A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AGTTGAGTGCCAG-
NNNNTTGTGTGCTTNN
 A C G T A C G T C G T A A C T G A C G T A C G T A C T G C G T A A T C G A C G T A C T G A G T C A G T C C G T A A C T G A C G T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AGTTGAGTGCCAG
--TTRAGTGSYK-
 C G T A A C T G A C G T A C G T A C T G C G T A A T C G A C G T A C T G A G T C A G T C C G T A A C T G
A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AGTTGAGTGCCAG
--TTGCGTGCVA-
 C G T A A C T G A C G T A C G T A C T G C G T A A T C G A C G T A C T G A G T C A G T C C G T A A C T G
A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T