Information for 5-AGGTCTTTARTCA (Motif 5)

C G T A A C T G A T C G A C G T A G T C A C G T A C G T A G C T C G T A C T A G A G C T A G T C C G T A
Reverse Opposite:
A C G T C T A G C T G A A G T C G A C T C T G A C G T A C G T A C T A G C G T A A T G C A G T C A C G T
p-value:1e-13
log p-value:-3.151e+01
Information Content per bp:1.837
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.8 +/- 24.8bp
Average Position of motif in Background42.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGGTCTTTARTCA
AGGTCTCTAACC-
 C G T A A C T G A T C G A C G T A G T C A C G T A C G T A G C T C G T A C T A G A G C T A G T C C G T A
C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AGGTCTTTARTCA
-RGCCATYAATCA
 C G T A A C T G A T C G A C G T A G T C A C G T A C G T A G C T C G T A C T A G A G C T A G T C C G T A
A C G T C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

PH0073.1_Hoxc9/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AGGTCTTTARTCA-
GGAGGTCATTAATTAT
 A C G T A C G T C G T A A C T G A T C G A C G T A G T C A C G T A C G T A G C T C G T A C T A G A G C T A G T C C G T A A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:4
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:AGGTCTTTARTCA
-----TTTAAT--
 C G T A A C T G A T C G A C G T A G T C A C G T A C G T A G C T C G T A C T A G A G C T A G T C C G T A
A C G T A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T

PB0129.1_Glis2_2/Jaspar

Match Rank:5
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:AGGTCTTTARTCA----
---TCTTTANTAATANN
 C G T A A C T G A T C G A C G T A G T C A C G T A C G T A G C T C G T A C T A G A G C T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T A G T C C A G T G C A T C G A T C G T A C G A T G A C T G T C A C G T A G A C T T G C A G C A T C G A T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:6
Score:0.55
Offset:3
Orientation:forward strand
Alignment:AGGTCTTTARTCA
---TRTTTACTTW
 C G T A A C T G A T C G A C G T A G T C A C G T A C G T A G C T C G T A C T A G A G C T A G T C C G T A
A C G T A C G T A C G T A C G T C T A G A G C T A C G T A C G T C T G A A G T C G A C T A G C T C G T A

PB0040.1_Lef1_1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGGTCTTTARTCA---
AATCCCTTTGATCTATC
 A C G T C G T A A C T G A T C G A C G T A G T C A C G T A C G T A G C T C G T A C T A G A G C T A G T C C G T A A C G T A C G T A C G T
C T A G C T G A C G A T A G T C A G T C A G T C G A C T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G A C

PH0100.1_Lmx1a/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AGGTCTTTARTCA-----
-NNTTTTTAATTAATTCG
 C G T A A C T G A T C G A C G T A G T C A C G T A C G T A G C T C G T A C T A G A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C T A G C T A G C G A T C G A T G C A T G A C T G A C T C G T A C G T A C G A T C G A T C T G A C T G A C G A T C G A T A T G C A T C G

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGGTCTTTARTCA---
ATTTCCTTTGATCTATA
 A C G T C G T A A C T G A T C G A C G T A G T C A C G T A C G T A G C T C G T A C T A G A G C T A G T C C G T A A C G T A C G T A C G T
C G T A C G A T C A G T A G C T A G T C A G T C G A C T G A C T C G A T A C T G C G T A C G A T T A G C G C A T C G T A C A G T T G C A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AGGTCTTTARTCA
---TGTTTACTTT
 C G T A A C T G A T C G A C G T A G T C A C G T A C G T A G C T C G T A C T A G A G C T A G T C C G T A
A C G T A C G T A C G T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T