Information for 4-AACTTTATTGRTA (Motif 3)

C G T A C G T A A G T C A C G T A C G T A C G T C G T A A C G T A G C T A C T G C T A G A G C T C G T A
Reverse Opposite:
A C G T C T G A G A T C A G T C C T G A C G T A A C G T C G T A C G T A C G T A A C T G A C G T A C G T
p-value:1e-16
log p-value:-3.762e+01
Information Content per bp:1.917
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.4 +/- 19.5bp
Average Position of motif in Background91.4 +/- 0.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0078.1_Hoxd13/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--AACTTTATTGRTA-
NNANTTTTATTGGNNN
 A C G T A C G T C G T A C G T A A G T C A C G T A C G T A C G T C G T A A C G T A G C T A C T G C T A G A G C T C G T A A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

PH0057.1_Hoxb13/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--AACTTTATTGRTA-
NNAATTTTATTGGNTN
 A C G T A C G T C G T A C G T A A G T C A C G T A C G T A C G T C G T A A C G T A G C T A C T G C T A G A G C T C G T A A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:3
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:AACTTTATTGRTA
-TTTTTATTGG--
 C G T A C G T A A G T C A C G T A C G T A C G T C G T A A C G T A G C T A C T G C T A G A G C T C G T A
A C G T C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AACTTTATTGRTA
-NTTTTATTGG--
 C G T A C G T A A G T C A C G T A C G T A C G T C G T A A C G T A G C T A C T G C T A G A G C T C G T A
A C G T C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T A C G T

PB0129.1_Glis2_2/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AACTTTATTGRTA--
-TCTTTANTAATANN
 C G T A C G T A A G T C A C G T A C G T A C G T C G T A A C G T A G C T A C T G C T A G A G C T C G T A A C G T A C G T
A C G T A G C T A G T C C A G T G C A T C G A T C G T A C G A T G A C T G T C A C G T A G A C T T G C A G C A T C G A T

CDX1/MA0878.1/Jaspar

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AACTTTATTGRTA
--TTTTATTGC--
 C G T A C G T A A G T C A C G T A C G T A C G T C G T A A C G T A G C T A C T G C T A G A G C T C G T A
A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:7
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AACTTTATTGRTA
-NTTTTATTGG--
 C G T A C G T A A G T C A C G T A C G T A C G T C G T A A C G T A G C T A C T G C T A G A G C T C G T A
A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---AACTTTATTGRTA-
NTNAATTTTATTGNATT
 A C G T A C G T A C G T C G T A C G T A A G T C A C G T A C G T A C G T C G T A A C G T A G C T A C T G C T A G A G C T C G T A A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AACTTTATTGRTA
--TTTTATGGCTN
 C G T A C G T A A G T C A C G T A C G T A C G T C G T A A C G T A G C T A C T G C T A G A G C T C G T A
A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AACTTTATTGRTA
--TTTTATTRGN-
 C G T A C G T A A G T C A C G T A C G T A C G T C G T A A C G T A G C T A C T G C T A G A G C T C G T A
A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T