Information for 11-CTCTTGCCAG (Motif 23)

A G T C A C G T A G T C A C G T A C G T A C T G A G T C A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C T G A G T C C G T A C G T A A C T G C G T A A C T G
p-value:1e-5
log p-value:-1.281e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.2 +/- 15.0bp
Average Position of motif in Background31.0 +/- 19.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CTCTTGCCAG
--CTTGGCAA
 A G T C A C G T A G T C A C G T A C G T A C T G A G T C A G T C C G T A A C T G
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CTCTTGCCAG
NNACTTGCCTT
 A C G T A G T C A C G T A G T C A C G T A C G T A C T G A G T C A G T C C G T A A C T G
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CTCTTGCCAG-
--CGTGCCAAG
 A G T C A C G T A G T C A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C G T
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CTCTTGCCAG
----TGCCAA
 A G T C A C G T A G T C A C G T A C G T A C T G A G T C A G T C C G T A A C T G
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CTCTTGCCAG-
---TTGACAGC
 A G T C A C G T A G T C A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C G T
A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CTCTTGCCAG---
---ATGCCAGACN
 A G T C A C G T A G T C A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTCTTGCCAG--
CTGTTGCTAGGS
 A G T C A C G T A G T C A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C G T A C G T
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

GFX(?)/Promoter/Homer

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTCTTGCCAG---
-TCTCGCGAGAAT
 A G T C A C G T A G T C A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C G T A C G T A C G T
A C G T G A C T T G A C A C G T T A G C C A T G A G T C C A T G T C G A A C T G T C G A C T G A A G C T

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTCTTGCCAG-
-NNTTGGCANN
 A G T C A C G T A G T C A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C G T
A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CTCTTGCCAG--
--VBTGWCAGCB
 A G T C A C G T A G T C A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C G T A C G T
A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C