Information for 1-GCCCTCTAGTGGT (Motif 1)

A C T G T A G C A G T C G T A C A G C T A G T C A C G T C T G A A T C G A G C T A C T G A C T G G A C T
Reverse Opposite:
C T G A T A G C A G T C C T G A A T G C G A C T C G T A A C T G C T G A A C T G A C T G A C T G G T A C
p-value:1e-26
log p-value:-6.106e+01
Information Content per bp:1.799
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.29%
Number of Background Sequences with motif22.1
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets41.7 +/- 27.9bp
Average Position of motif in Background47.6 +/- 32.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.87
Offset:-5
Orientation:forward strand
Alignment:-----GCCCTCTAGTGGT--
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C T G T A G C A G T C G T A C A G C T A G T C A C G T C T G A A T C G A G C T A C T G A C T G G A C T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.86
Offset:-4
Orientation:reverse strand
Alignment:----GCCCTCTAGTGGT--
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C T G T A G C A G T C G T A C A G C T A G T C A C G T C T G A A T C G A G C T A C T G A C T G G A C T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.85
Offset:-7
Orientation:forward strand
Alignment:-------GCCCTCTAGTGGT
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G T A G C A G T C G T A C A G C T A G T C A C G T C T G A A T C G A G C T A C T G A C T G G A C T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCCCTCTAGTGGT
GCCATCTGTT---
 A C T G T A G C A G T C G T A C A G C T A G T C A C G T C T G A A T C G A G C T A C T G A C T G G A C T
T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCCCTCTAGTGGT
NTGCCCANNGGTNA-
 A C G T A C G T A C T G T A G C A G T C G T A C A G C T A G T C A C G T C T G A A T C G A G C T A C T G A C T G G A C T
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCCCTCTAGTGGT---
NANTTTCAAGTGGTTAN
 A C G T A C T G T A G C A G T C G T A C A G C T A G T C A C G T C T G A A T C G A G C T A C T G A C T G G A C T A C G T A C G T A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

NKX2-3/MA0672.1/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GCCCTCTAGTGGT
---NTCAAGTGGN
 A C T G T A G C A G T C G T A C A G C T A G T C A C G T C T G A A T C G A G C T A C T G A C T G G A C T
A C G T A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GCCCTCTAGTGGT
---NTCAAGTGG-
 A C T G T A G C A G T C G T A C A G C T A G T C A C G T C T G A A T C G A G C T A C T G A C T G G A C T
A C G T A C G T A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCCCTCTAGTGGT
ACCATCTGTT---
 A C T G T A G C A G T C G T A C A G C T A G T C A C G T C T G A A T C G A G C T A C T G A C T G G A C T
T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GCCCTCTAGTGGT
---BTBRAGTGSN
 A C T G T A G C A G T C G T A C A G C T A G T C A C G T C T G A A T C G A G C T A C T G A C T G G A C T
A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C