Information for 1-CCACCAGAGGGCG (Motif 1)

A G T C A G T C C G T A T A G C G A T C C G T A A C T G C G T A A T C G A C T G A C T G G T A C C T A G
Reverse Opposite:
A G T C A C T G A G T C A G T C A T G C A C G T A G T C A C G T C T A G A C T G G C A T A C T G A C T G
p-value:1e-23
log p-value:-5.352e+01
Information Content per bp:1.858
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.89%
Number of Background Sequences with motif17.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets42.8 +/- 15.3bp
Average Position of motif in Background46.0 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-CCACCAGAGGGCG------
GCCASCAGGGGGCGCYVNNG
 A C G T A G T C A G T C C G T A T A G C G A T C C G T A A C T G C G T A A T C G A C T G A C T G G T A C C T A G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.85
Offset:-3
Orientation:forward strand
Alignment:---CCACCAGAGGGCG---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A G T C A G T C C G T A T A G C G A T C C G T A A C T G C G T A A T C G A C T G A C T G G T A C C T A G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---CCACCAGAGGGCG----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A G T C A G T C C G T A T A G C G A T C C G T A A C T G C G T A A T C G A C T G A C T G G T A C C T A G A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CCACCAGAGGGCG
--AACAGATGGC-
 A G T C A G T C C G T A T A G C G A T C C G T A A C T G C G T A A T C G A C T G A C T G G T A C C T A G
A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CCACCAGAGGGCG
---CCAGACRSVB
 A G T C A G T C C G T A T A G C G A T C C G T A A C T G C G T A A T C G A C T G A C T G G T A C C T A G
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CCACCAGAGGGCG
---CCAGACAG--
 A G T C A G T C C G T A T A G C G A T C C G T A A C T G C G T A A T C G A C T G A C T G G T A C C T A G
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCACCAGAGGGCG-
TCACCTCTGGGCAG
 A G T C A G T C C G T A T A G C G A T C C G T A A C T G C G T A A T C G A C T G A C T G G T A C C T A G A C G T
G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G

PB0101.1_Zic1_1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CCACCAGAGGGCG
CCCCCCCGGGGGNN
 A C G T A G T C A G T C C G T A T A G C G A T C C G T A A C T G C G T A A T C G A C T G A C T G G T A C C T A G
T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CCACCAGAGGGCG
--AACAGATGGT-
 A G T C A G T C C G T A T A G C G A T C C G T A A C T G C G T A A T C G A C T G A C T G G T A C C T A G
A C G T A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:10
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CCACCAGAGGGCG
--AACAKATGGY-
 A G T C A G T C C G T A T A G C G A T C C G T A A C T G C G T A A T C G A C T G A C T G G T A C C T A G
A C G T A C G T C T G A T G C A A G T C T C G A A C T G T G C A G C A T A C T G A C T G G A C T A C G T