Information for 4-GAGGCACTAA (Motif 8)

A C T G C G T A C T A G A T C G A G T C C G T A A G T C C G A T G C T A C G T A
Reverse Opposite:
C G A T C G A T G C T A A C T G A C G T C T A G T A G C A G T C A C G T A G T C
p-value:1e-10
log p-value:-2.395e+01
Information Content per bp:1.841
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.83%
Number of Background Sequences with motif94.9
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets42.5 +/- 28.2bp
Average Position of motif in Background51.4 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GAGGCACTAA--
RGGGCACTAACY
 A C T G C G T A C T A G A T C G A G T C C G T A A G T C C G A T G C T A C G T A A C G T A C G T
T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GAGGCACTAA-
-AAGCACTTAA
 A C T G C G T A C T A G A T C G A G T C C G T A A G T C C G A T G C T A C G T A A C G T
A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GAGGCACTAA--
-AGCCACTCAAG
 A C T G C G T A C T A G A T C G A G T C C G T A A G T C C G A T G C T A C G T A A C G T A C G T
A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

FOSL1/MA0477.1/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GAGGCACTAA
NATGAGTCACC--
 A C G T A C G T A C G T A C T G C G T A C T A G A T C G A G T C C G T A A G T C C G A T G C T A C G T A
A T G C T G C A A C G T A C T G C G T A A T C G A C G T A G T C C G T A A G T C G A T C A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GAGGCACTAA-
-MRSCACTYAA
 A C T G C G T A C T A G A T C G A G T C C G T A A G T C C G A T G C T A C G T A A C G T
A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GAGGCACTAA-
-AASCACTCAA
 A C T G C G T A C T A G A T C G A G T C C G T A A G T C C G A T G C T A C G T A A C G T
A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

ISL2/MA0914.1/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GAGGCACTAA-
---GCACTTAA
 A C T G C G T A C T A G A T C G A G T C C G T A A G T C C G A T G C T A C G T A A C G T
A C G T A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A

FOSL2/MA0478.1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GAGGCACTAA
NTGAGTCATCN-
 A C G T A C G T A C T G C G T A C T A G A T C G A G T C C G T A A G T C C G A T G C T A C G T A
T G C A A C G T A C T G C G T A T A C G A G C T A G T C C G T A G A C T A G T C T G A C A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GAGGCACTAA-----
CGAAGCACACAAAATA
 A C G T A C T G C G T A C T A G A T C G A G T C C G T A A G T C C G A T G C T A C G T A A C G T A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

NKX3-2/MA0122.2/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GAGGCACTAA-
--ACCACTTAA
 A C T G C G T A C T A G A T C G A G T C C G T A A G T C C G A T G C T A C G T A A C G T
A C G T A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A