Information for 4-CACAGACAARGTA (Motif 5)

A G T C C G T A A G T C C G T A A C T G T C G A A G T C C G T A C T G A C T A G A T C G G C A T C G T A
Reverse Opposite:
A C G T C G T A A T G C A G T C G A C T A C G T A C T G A C G T A G T C A C G T A C T G C G A T C T A G
p-value:1e-12
log p-value:-2.849e+01
Information Content per bp:1.834
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif15.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets50.0 +/- 23.0bp
Average Position of motif in Background51.6 +/- 22.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CACAGACAARGTA--
AAACAGACAAAGGAAT
 A C G T A G T C C G T A A G T C C G T A A C T G T C G A A G T C C G T A C T G A C T A G A T C G G C A T C G T A A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CACAGACAARGTA
-BCAGACWA----
 A G T C C G T A A G T C C G T A A C T G T C G A A G T C C G T A C T G A C T A G A T C G G C A T C G T A
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CACAGACAARGTA
CACAGN-------
 A G T C C G T A A G T C C G T A A C T G T C G A A G T C C G T A C T G A C T A G A T C G G C A T C G T A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CACAGACAARGTA
-CCAGACAG----
 A G T C C G T A A G T C C G T A A C T G T C G A A G T C C G T A C T G A C T A G A T C G G C A T C G T A
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CACAGACAARGTA
-CCAGACRSVB--
 A G T C C G T A A G T C C G T A A C T G T C G A A G T C C G T A C T G A C T A G A T C G G C A T C G T A
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CACAGACAARGTA
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A A C T G T C G A A G T C C G T A C T G A C T A G A T C G G C A T C G T A
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

SOX10/MA0442.1/Jaspar

Match Rank:7
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CACAGACAARGTA
-----ACAAAG--
 A G T C C G T A A G T C C G T A A C T G T C G A A G T C C G T A C T G A C T A G A T C G G C A T C G T A
A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CACAGACAARGTA--------
-YCAGGCWCAGTACCAGGCTC
 A G T C C G T A A G T C C G T A A C T G T C G A A G T C C G T A C T G A C T A G A T C G G C A T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G T C T G A C G C T A C T A G C T A G G A T C G C A T A T G C C G T A C T A G C A G T T C G A A T G C A G T C C G T A C A T G C T A G G T A C G A C T A T G C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CACAGACAARGTA
--AAGGCAAGTGT
 A G T C C G T A A G T C C G T A A C T G T C G A A G T C C G T A C T G A C T A G A T C G G C A T C G T A
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Gata1/MA0035.3/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CACAGACAARGTA
-ANAGATAAGAA-
 A G T C C G T A A G T C C G T A A C T G T C G A A G T C C G T A C T G A C T A G A T C G G C A T C G T A
A C G T C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A A C G T