Information for 7-CAGGGACRCACAAAGC (Motif 15)

A G T C C T G A A T C G T A C G A T C G C T G A T A G C T C A G A G T C T C G A T A G C C T G A T G C A G T C A T A C G A G T C
Reverse Opposite:
A C T G A T G C A C G T A C G T A G C T A T C G A G C T A C T G A G T C A T C G A G C T A T G C A G T C T A G C A G C T A C T G
p-value:1e-10
log p-value:-2.449e+01
Information Content per bp:1.684
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.0 +/- 18.3bp
Average Position of motif in Background35.8 +/- 19.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CAGGGACRCACAAAGC
AGCGGCACACACGCAA-
 A C G T A G T C C T G A A T C G T A C G A T C G C T G A T A G C T C A G A G T C T C G A T A G C C T G A T G C A G T C A T A C G A G T C
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CAGGGACRCACAAAGC
CGAAGCACACAAAATA-
 A C G T A G T C C T G A A T C G T A C G A T C G C T G A T A G C T C A G A G T C T C G A T A G C C T G A T G C A G T C A T A C G A G T C
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CAGGGACRCACAAAGC
CCAGGAACAG-------
 A C G T A G T C C T G A A T C G T A C G A T C G C T G A T A G C T C A G A G T C T C G A T A G C C T G A T G C A G T C A T A C G A G T C
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CAGGGACRCACAAAGC
SCAGYCADGCATGAC--
 A C G T A G T C C T G A A T C G T A C G A T C G C T G A T A G C T C A G A G T C T C G A T A G C C T G A T G C A G T C A T A C G A G T C
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:5
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:CAGGGACRCACAAAGC
------VRRACAAWGG
 A G T C C T G A A T C G T A C G A T C G C T G A T A G C T C A G A G T C T C G A T A G C C T G A T G C A G T C A T A C G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

PB0166.1_Sox12_2/Jaspar

Match Rank:6
Score:0.51
Offset:3
Orientation:forward strand
Alignment:CAGGGACRCACAAAGC---
---AAACAGACAAAGGAAT
 A G T C C T G A A T C G T A C G A T C G C T G A T A G C T C A G A G T C T C G A T A G C C T G A T G C A G T C A T A C G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

PB0199.1_Zfp161_2/Jaspar

Match Rank:7
Score:0.51
Offset:4
Orientation:forward strand
Alignment:CAGGGACRCACAAAGC--
----GCCGCGCAGTGCGT
 A G T C C T G A A T C G T A C G A T C G C T G A T A G C T C A G A G T C T C G A T A G C C T G A T G C A G T C A T A C G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

SOX10/MA0442.1/Jaspar

Match Rank:8
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:CAGGGACRCACAAAGC
---------ACAAAG-
 A G T C C T G A A T C G T A C G A T C G C T G A T A G C T C A G A G T C T C G A T A G C C T G A T G C A G T C A T A C G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:9
Score:0.50
Offset:-6
Orientation:forward strand
Alignment:------CAGGGACRCACAAAGC
NGTGTTCAVTSAAGCGKAAA--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C T G A A T C G T A C G A T C G C T G A T A G C T C A G A G T C T C G A T A G C C T G A T G C A G T C A T A C G A G T C
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:CAGGGACRCACAAAGC
------AAAACAAAGG
 A G T C C T G A A T C G T A C G A T C G C T G A T A G C T C A G A G T C T C G A T A G C C T G A T G C A G T C A T A C G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G