Information for 2-AGATCAGATTACA (Motif 2)

C G T A C T A G C G T A A C G T A G T C C G T A C A T G T C G A A C G T A C G T T C G A A G T C G T C A
Reverse Opposite:
A C G T A C T G A C G T C G T A T C G A A G C T G T A C C G A T A C T G C G T A A C G T A G T C C G A T
p-value:1e-16
log p-value:-3.693e+01
Information Content per bp:1.787
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif14.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets55.6 +/- 20.3bp
Average Position of motif in Background50.8 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)3.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:0.76
Offset:0
Orientation:forward strand
Alignment:AGATCAGATTACA
GKVTCADRTTWC-
 C G T A C T A G C G T A A C G T A G T C C G T A C A T G T C G A A C G T A C G T T C G A A G T C G T C A
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:AGATCAGATTACA
GKMTCADRTTWC-
 C G T A C T A G C G T A A C G T A G T C C G T A C A T G T C G A A C G T A C G T T C G A A G T C G T C A
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGATCAGATTACA
TAATCHGATTAC-
 C G T A C T A G C G T A A C G T A G T C C G T A C A T G T C G A A C G T A C G T T C G A A G T C G T C A
G C A T C T G A T G C A G A C T A G T C G T A C T C A G C G T A A G C T A C G T G C T A G T A C A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:4
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGATCAGATTACA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T C G T A C T A G C G T A A C G T A G T C C G T A C A T G T C G A A C G T A C G T T C G A A G T C G T C A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

GATA3/MA0037.2/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGATCAGATTACA
AGATAAGA-----
 C G T A C T A G C G T A A C G T A G T C C G T A C A T G T C G A A C G T A C G T T C G A A G T C G T C A
C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A A C G T A C G T A C G T A C G T A C G T

DUX4/MA0468.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGATCAGATTACA
TGATTAAATTA--
 C G T A C T A G C G T A A C G T A G T C C G T A C A T G T C G A A C G T A C G T T C G A A G T C G T C A
C G A T C T A G C G T A A C G T C A G T T C G A T C G A C T G A A C G T A G C T C G T A A C G T A C G T

Mecom/MA0029.1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGATCAGATTACA
AAGATAAGATAACA
 A C G T C G T A C T A G C G T A A C G T A G T C C G T A C A T G T C G A A C G T A C G T T C G A A G T C G T C A
C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A

PB0023.1_Gata6_1/Jaspar

Match Rank:8
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----AGATCAGATTACA
TATAGAGATAAGAATTG-
 A C G T A C G T A C G T A C G T A C G T C G T A C T A G C G T A A C G T A G T C C G T A C A T G T C G A A C G T A C G T T C G A A G T C G T C A
C G A T G T C A C G A T T G C A C A G T G C T A A C T G C G T A A G C T C G T A C G T A A T C G T G C A C T G A C G A T G C A T T C A G A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGATCAGATTACA--
GGGGTCAAAGTCCAAT
 A C G T C G T A C T A G C G T A A C G T A G T C C G T A C A T G T C G A A C G T A C G T T C G A A G T C G T C A A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGATCAGATTACA
YTAATYNRATTA--
 A C G T C G T A C T A G C G T A A C G T A G T C C G T A C A T G T C G A A C G T A C G T T C G A A G T C G T C A
G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A A C G T A C G T