Information for 6-AGGAGGGCAGBAWTGG (Motif 13)

C G T A C T A G T A C G G T C A A C T G A C T G A T C G G A T C C G T A T C A G A G C T C G T A G C A T A C G T C A T G C T A G
Reverse Opposite:
A G T C G A T C G T C A C G T A G C A T T C G A A G T C A C G T C T A G A T G C A G T C G T A C C A G T A T G C G A T C A C G T
p-value:1e-11
log p-value:-2.642e+01
Information Content per bp:1.700
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif26.5
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets37.3 +/- 21.7bp
Average Position of motif in Background46.8 +/- 23.0bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AGGAGGGCAGBAWTGG
-TNNGGGCAG------
 C G T A C T A G T A C G G T C A A C T G A C T G A T C G G A T C C G T A T C A G A G C T C G T A G C A T A C G T C A T G C T A G
A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGGAGGGCAGBAWTGG
-NGTGGGCAT------
 C G T A C T A G T A C G G T C A A C T G A C T G A T C G G A T C C G T A T C A G A G C T C G T A G C A T A C G T C A T G C T A G
A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:3
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---AGGAGGGCAGBAWTGG
GGAAGGAAGGAAGGAAGG-
 A C G T A C G T A C G T C G T A C T A G T A C G G T C A A C T G A C T G A T C G G A T C C G T A T C A G A G C T C G T A G C A T A C G T C A T G C T A G
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G A C G T

E2F6/MA0471.1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGGAGGGCAGBAWTGG
GGGCGGGAAGG-----
 C G T A C T A G T A C G G T C A A C T G A C T G A T C G G A T C C G T A T C A G A G C T C G T A G C A T A C G T C A T G C T A G
C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G A C G T A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:5
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---AGGAGGGCAGBAWTGG
NGTAGGTTGGCATNNN---
 A C G T A C G T A C G T C G T A C T A G T A C G G T C A A C T G A C T G A T C G G A T C C G T A T C A G A G C T C G T A G C A T A C G T C A T G C T A G
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T A C G T A C G T

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGGAGGGCAGBAWTGG
CWGGCGGGAA-------
 A C G T C G T A C T A G T A C G G T C A A C T G A C T G A T C G G A T C C G T A T C A G A G C T C G T A G C A T A C G T C A T G C T A G
T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GCM2/MA0767.1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGGAGGGCAGBAWTGG
TATGCGGGTA-------
 A C G T C G T A C T A G T A C G G T C A A C T G A C T G A T C G G A T C C G T A T C A G A G C T C G T A G C A T A C G T C A T G C T A G
A C G T T C G A A G C T T C A G A T G C C A T G A C T G C T A G G A C T C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:AGGAGGGCAGBAWTGG
-GGTTGGCAT------
 C G T A C T A G T A C G G T C A A C T G A C T G A T C G G A T C C G T A T C A G A G C T C G T A G C A T A C G T C A T G C T A G
A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AGGAGGGCAGBAWTGG
-TRAGGTCA-------
 C G T A C T A G T A C G G T C A A C T G A C T G A T C G G A T C C G T A T C A G A G C T C G T A G C A T A C G T C A T G C T A G
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0024.1_Gcm1_1/Jaspar

Match Rank:10
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----AGGAGGGCAGBAWTGG
NNNNATGCGGGTNNNN----
 A C G T A C G T A C G T A C G T C G T A C T A G T A C G G T C A A C T G A C T G A T C G G A T C C G T A T C A G A G C T C G T A G C A T A C G T C A T G C T A G
G T C A C T G A G C A T A C T G T C G A G A C T T C A G A T G C C A T G A C T G A C T G A G C T C G T A A G T C A C T G C G T A A C G T A C G T A C G T A C G T