Information for 11-CTTGGTTGGCTGA (Motif 12)

A T G C A C G T A C G T A C T G A C T G A C G T G A C T A C T G A C T G A G T C A G C T A C T G C G T A
Reverse Opposite:
A C G T A G T C C T G A A C T G A G T C A G T C C T G A C G T A A G T C A G T C C G T A G T C A A T C G
p-value:1e-9
log p-value:-2.080e+01
Information Content per bp:1.931
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.6 +/- 8.9bp
Average Position of motif in Background44.1 +/- 36.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CTTGGTTGGCTGA
GTCATGCHTGRCTGS
 A C G T A C G T A T G C A C G T A C G T A C T G A C T G A C G T G A C T A C T G A C T G A G T C A G C T A C T G C G T A
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CTTGGTTGGCTGA
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A T G C A C G T A C G T A C T G A C T G A C G T G A C T A C T G A C T G A G T C A G C T A C T G C G T A
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CTTGGTTGGCTGA-
--TGATTGGCTANN
 A T G C A C G T A C G T A C T G A C T G A C G T G A C T A C T G A C T G A G T C A G C T A C T G C G T A A C G T
A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CTTGGTTGGCTGA
-----TWGTCTGV
 A T G C A C G T A C G T A C T G A C T G A C G T G A C T A C T G A C T G A G T C A G C T A C T G C G T A
A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

PH0026.1_Duxbl/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CTTGGTTGGCTGA
NNNNGTTGATTGGGTCG
 A C G T A C G T A C G T A C G T A T G C A C G T A C G T A C T G A C T G A C G T G A C T A C T G A C T G A G T C A G C T A C T G C G T A
A T G C C G T A A G T C A G T C T C A G G A C T C G A T C T A G C T G A A C G T A C G T C T A G T C A G T C A G G A C T G A T C T C A G

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.57
Offset:5
Orientation:forward strand
Alignment:CTTGGTTGGCTGA
-----TTGGCA--
 A T G C A C G T A C G T A C T G A C T G A C G T G A C T A C T G A C T G A G T C A G C T A C T G C G T A
A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T

PAX5/MA0014.2/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CTTGGTTGGCTGA----
GTCACGCTTGGCTGCNCNN
 A C G T A C G T A T G C A C G T A C G T A C T G A C T G A C G T G A C T A C T G A C T G A G T C A G C T A C T G C G T A A C G T A C G T A C G T A C G T
C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGTTGGCTGA--
NGTAGGTTGGCATNNN
 A C G T A T G C A C G T A C G T A C T G A C T G A C G T G A C T A C T G A C T G A G T C A G C T A C T G C G T A A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

SREBF1/MA0595.1/Jaspar

Match Rank:9
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CTTGGTTGGCTGA-
----GTGGGGTGAT
 A T G C A C G T A C G T A C T G A C T G A C G T G A C T A C T G A C T G A G T C A G C T A C T G C G T A A C G T
A C G T A C G T A C G T A C G T T C A G A C G T A T C G C T A G A T C G A T C G A C G T A C T G C G T A A G C T

NFYB/MA0502.1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTTGGTTGGCTGA---
-CTGATTGGTCNATTT
 A T G C A C G T A C G T A C T G A C T G A C G T G A C T A C T G A C T G A G T C A G C T A C T G C G T A A C G T A C G T A C G T
A C G T A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T