Information for 9-CAAAAATTTGCTA (Motif 7)

A T G C C G T A T C G A C G T A C G T A C G T A A G C T A G C T A C G T A C T G G T A C C A G T C G T A
Reverse Opposite:
A C G T G T C A A C T G A G T C C G T A C T G A C T G A A C G T A C G T A C G T A G C T C G A T A T C G
p-value:1e-9
log p-value:-2.300e+01
Information Content per bp:1.839
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif7.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets51.0 +/- 22.6bp
Average Position of motif in Background43.0 +/- 19.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0146.1_Mafk_2/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CAAAAATTTGCTA--
GAAAAAATTGCAAGG
 A T G C C G T A T C G A C G T A C G T A C G T A A G C T A G C T A C G T A C T G G T A C C A G T C G T A A C G T A C G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CAAAAATTTGCTA-
--GWAAYHTGABMC
 A T G C C G T A T C G A C G T A C G T A C G T A A G C T A G C T A C G T A C T G G T A C C A G T C G T A A C G T
A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

PB0105.1_Arid3a_2/Jaspar

Match Rank:3
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CAAAAATTTGCTA-----
---NNATNTGATANNNNN
 A T G C C G T A T C G A C G T A C G T A C G T A A G C T A G C T A C G T A C T G G T A C C A G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A C T G A G C T A A G C T G C A T G A C T A T C G T C G A A G C T T C G A A G T C A T C G A C T G C A T G C A G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:4
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CAAAAATTTGCTA-
----AAGGTGTKAA
 A T G C C G T A T C G A C G T A C G T A C G T A A G C T A G C T A C G T A C T G G T A C C A G T C G T A A C G T
A C G T A C G T A C G T A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A

PB0145.1_Mafb_2/Jaspar

Match Rank:5
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------CAAAAATTTGCTA
CAATTGCAAAAATAT----
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A T C G A C G T A C G T A C G T A A G C T A G C T A C G T A C T G G T A C C A G T C G T A
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T A C G T A C G T A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CAAAAATTTGCTA-
--GWAAYHTGAKMC
 A T G C C G T A T C G A C G T A C G T A C G T A A G C T A G C T A C G T A C T G G T A C C A G T C G T A A C G T
A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer

Match Rank:7
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------CAAAAATTTGCTA--
ANTTMRCASBNNNGTGYKAAN
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A T C G A C G T A C G T A C G T A A G C T A G C T A C G T A C T G G T A C C A G T C G T A A C G T A C G T
C G T A C G A T G A C T G A C T T G A C C T G A A T G C C T G A T A G C A G T C A C G T T C G A C A T G T A C G G A C T A T C G G A C T A C G T C T G A T C G A C G T A

BHLHE23/MA0817.1/Jaspar

Match Rank:8
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CAAAAATTTGCTA
-AAACATATGTTT
 A T G C C G T A T C G A C G T A C G T A C G T A A G C T A G C T A C G T A C T G G T A C C A G T C G T A
A C G T C G T A T C G A T G C A G T A C C T G A A G C T T G C A G A C T A C T G A C G T G A C T C G A T

ONECUT2/MA0756.1/Jaspar

Match Rank:9
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CAAAAATTTGCTA--
-AAAAAATCGATAAT
 A T G C C G T A T C G A C G T A C G T A C G T A A G C T A G C T A C G T A C T G G T A C C A G T C G T A A C G T A C G T
A C G T T C G A C T G A C G T A G C T A C T G A C T G A A C G T G T A C T C A G G C T A G C A T C G T A G C T A G C A T

PH0166.1_Six6_2/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:CAAAAATTTGCTA-------
---AATNTTGATACCCTATN
 A T G C C G T A T C G A C G T A C G T A C G T A A G C T A G C T A C G T A C T G G T A C C A G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G C A C T G A C G A T C T G A C G A T C G A T C A T G C G T A G A C T G T C A A G T C G A T C G A T C A G C T G C T A G C A T G A C T