Information for 12-AGATCACAACAGG (Motif 35)

C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C G T A A G T C C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A C T G A C G T A C G T A C T G A C G T A C T G C G T A A C G T A G T C A C G T
p-value:1e0
log p-value:-1.231e+00
Information Content per bp:1.530
Number of Target Sequences with motif401.0
Percentage of Target Sequences with motif67.17%
Number of Background Sequences with motif32271.2
Percentage of Background Sequences with motif66.02%
Average Position of motif in Targets48.8 +/- 26.2bp
Average Position of motif in Background50.3 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.36
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0120.1_Foxj1_2/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AGATCACAACAGG--
ATGTCACAACAACAC
 C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C G T A A G T C C G T A A C T G A C T G A C G T A C G T
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AGATCACAACAGG---
-GAGCACAGCAGGACA
 C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C G T A A G T C C G T A A C T G A C T G A C G T A C G T A C G T
A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.65
Offset:4
Orientation:forward strand
Alignment:AGATCACAACAGG---
----CACAGCAGGGGG
 C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C G T A A G T C C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AGATCACAACAGG---
-CCACACAGCAGGAGA
 C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C G T A A G T C C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0122.1_Foxk1_2/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGATCACAACAGG-
CAAACAACAACACCT
 A C G T C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C G T A A G T C C G T A A C T G A C T G A C G T
G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

PB0121.1_Foxj3_2/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGATCACAACAGG---
AACACCAAAACAAAGGA
 A C G T C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C G T A A G T C C G T A A C T G A C T G A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AGATCACAACAGG---
-CCACACAGCAGGAGA
 C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C G T A A G T C C G T A A C T G A C T G A C G T A C G T A C G T
A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:AGATCACAACAGG-----
---DCHCAGCAGGRGGCC
 C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C G T A A G T C C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

SREBF2/MA0596.1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AGATCACAACAGG
--ATCACCCCAT-
 C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C G T A A G T C C G T A A C T G A C T G
A C G T A C G T C T G A A C G T A G T C C G T A A T G C T A G C A G T C A T G C C G T A A G C T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGATCACAACAGG
AAGGTCAC------
 A C G T C G T A A C T G C G T A A C G T A G T C C G T A A G T C C G T A C G T A A G T C C G T A A C T G A C T G
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T