Information for 13-TCGGAGCAGGGGTTCG (Motif 16)

A C G T A G T C A C T G A C T G C G T A A C T G A T G C C G T A A C T G A C T G A C T G T C A G A C G T A G C T A G T C A T C G
Reverse Opposite:
A T G C C T A G C T G A C G T A A G T C A G T C A G T C A G T C A C G T A T C G A G T C A C G T A G T C A G T C C T A G C G T A
p-value:1e-9
log p-value:-2.082e+01
Information Content per bp:1.920
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.5 +/- 21.4bp
Average Position of motif in Background83.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TCGGAGCAGGGGTTCG
-CGGAGC---------
 A C G T A G T C A C T G A C T G C G T A A C T G A T G C C G T A A C T G A C T G A C T G T C A G A C G T A G C T A G T C A T C G
A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TCGGAGCAGGGGTTCG
NCGCAGCGGGGGGTC-
 A C G T A G T C A C T G A C T G C G T A A C T G A T G C C G T A A C T G A C T G A C T G T C A G A C G T A G C T A G T C A T C G
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TCGGAGCAGGGGTTCG
-CACAGCGGGGGGTC-
 A C G T A G T C A C T G A C T G C G T A A C T G A T G C C G T A A C T G A C T G A C T G T C A G A C G T A G C T A G T C A T C G
A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TCGGAGCAGGGGTTCG
DCHCAGCAGGRGGCC-
 A C G T A G T C A C T G A C T G C G T A A C T G A T G C C G T A A C T G A C T G A C T G T C A G A C G T A G C T A G T C A T C G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TCGGAGCAGGGGTTCG
-CACAGCAGGGGG---
 A C G T A G T C A C T G A C T G C G T A A C T G A T G C C G T A A C T G A C T G A C T G T C A G A C G T A G C T A G T C A T C G
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TCGGAGCAGGGGTTCG
-GGGAGGACNG-----
 A C G T A G T C A C T G A C T G C G T A A C T G A T G C C G T A A C T G A C T G A C T G T C A G A C G T A G C T A G T C A T C G
A C G T C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TCGGAGCAGGGGTTCG
NCNCAGCGGGGGGTC-
 A C G T A G T C A C T G A C T G C G T A A C T G A T G C C G T A A C T G A C T G A C T G T C A G A C G T A G C T A G T C A T C G
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TCGGAGCAGGGGTTCG
CCACACAGCAGGAGA---
 A C G T A C G T A C G T A G T C A C T G A C T G C G T A A C T G A T G C C G T A A C T G A C T G A C T G T C A G A C G T A G C T A G T C A T C G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--TCGGAGCAGGGGTTCG
CCACACAGCAGGAGA---
 A C G T A C G T A C G T A G T C A C T G A C T G C G T A A C T G A T G C C G T A A C T G A C T G A C T G T C A G A C G T A G C T A G T C A T C G
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:TCGGAGCAGGGGTTCG
---SDGCAGGTGCNS-
 A C G T A G T C A C T G A C T G C G T A A C T G A T G C C G T A A C T G A C T G A C T G T C A G A C G T A G C T A G T C A T C G
A C G T A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T