Information for 1-AAGAGGCTTGCCG (Motif 13)

C G T A C G T A A C T G C T G A C T A G A C T G A G T C A C G T A C G T A T C G A T G C G T A C A C T G
Reverse Opposite:
G T A C A C T G A T C G A T G C C G T A C G T A A C T G A G T C G A T C A G C T A G T C A C G T A C G T
p-value:1e-9
log p-value:-2.107e+01
Information Content per bp:1.919
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif14.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets47.4 +/- 22.5bp
Average Position of motif in Background22.9 +/- 24.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:AAGAGGCTTGCCG
---AAGCTTG---
 C G T A C G T A A C T G C T G A C T A G A C T G A G T C A C G T A C G T A T C G A T G C G T A C A C T G
A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:2
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------AAGAGGCTTGCCG
AANTTCAAGTGGCTTN---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G C T G A C T A G A C T G A G T C A C G T A C G T A T C G A T G C G T A C A C T G
C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A A C G T A C G T A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:3
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------AAGAGGCTTGCCG
AATTTCAAGTGGCTTN---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G C T G A C T A G A C T G A G T C A C G T A C G T A T C G A T G C G T A C A C T G
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A A C G T A C G T A C G T

Crx/MA0467.1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AAGAGGCTTGCCG
AAGAGGATTAG--
 C G T A C G T A A C T G C T G A C T A G A C T G A G T C A C G T A C G T A T C G A T G C G T A C A C T G
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AAGAGGCTTGCCG--
CAAAGGCGTGGCCAG
 C G T A C G T A A C T G C T G A C T A G A C T G A G T C A C G T A C G T A T C G A T G C G T A C A C T G A C G T A C G T
A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

PH0115.1_Nkx2-6/Jaspar

Match Rank:6
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------AAGAGGCTTGCCG
AATNTTAAGTGGNTNN---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G C T G A C T A G A C T G A G T C A C G T A C G T A T C G A T G C G T A C A C T G
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A A C G T A C G T A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:7
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------AAGAGGCTTGCCG
AAATTCAAGTGGNTTN---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G C T G A C T A G A C T G A G T C A C G T A C G T A T C G A T G C G T A C A C T G
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AAGAGGCTTGCCG-
---NNACTTGCCTT
 C G T A C G T A A C T G C T G A C T A G A C T G A G T C A C G T A C G T A T C G A T G C G T A C A C T G A C G T
A C G T A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

KLF13/MA0657.1/Jaspar

Match Rank:9
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----AAGAGGCTTGCCG-
CAAAAAGGGGCGTGGCAT
 A C G T A C G T A C G T A C G T C G T A C G T A A C T G C T G A C T A G A C T G A G T C A C G T A C G T A T C G A T G C G T A C A C T G A C G T
G T A C G T C A G T C A G T C A C T G A C T G A C A T G C T A G A C T G C T A G G A T C T A C G A G C T C A T G C A T G G A T C G T C A G A C T

MF0003.1_REL_class/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:AAGAGGCTTGCCG
--GGGGATTTCC-
 C G T A C G T A A C T G C T G A C T A G A C T G A G T C A C G T A C G T A T C G A T G C G T A C A C T G
A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T