Information for 2-CCACAAGGGA (Motif 9)

G T A C T A G C C G T A T G A C T G C A T G C A C A T G C T A G A T C G C T G A
Reverse Opposite:
A G C T A T G C G A T C G T A C A C G T A C G T A C T G G C A T A T C G A C T G
p-value:1e-10
log p-value:-2.381e+01
Information Content per bp:1.693
Number of Target Sequences with motif63.0
Percentage of Target Sequences with motif7.74%
Number of Background Sequences with motif1490.0
Percentage of Background Sequences with motif3.06%
Average Position of motif in Targets50.4 +/- 25.7bp
Average Position of motif in Background49.7 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CCACAAGGGA
-AACAAAGG-
 G T A C T A G C C G T A T G A C T G C A T G C A C A T G C T A G A T C G C T G A
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CCACAAGGGA
-RACAAWGG-
 G T A C T A G C C G T A T G A C T G C A T G C A C A T G C T A G A T C G C T G A
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:3
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CCACAAGGGA----
--ACAAAGGNBCCT
 G T A C T A G C C G T A T G A C T G C A T G C A C A T G C T A G A T C G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

SOX10/MA0442.1/Jaspar

Match Rank:4
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CCACAAGGGA
--ACAAAG--
 G T A C T A G C C G T A T G A C T G C A T G C A C A T G C T A G A T C G C T G A
A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CCACAAGGGA
NWAACCACADNN--
 A C G T A C G T A C G T A C G T G T A C T A G C C G T A T G A C T G C A T G C A C A T G C T A G A T C G C T G A
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CCACAAGGGA
VRRACAAWGG-
 A C G T G T A C T A G C C G T A T G A C T G C A T G C A C A T G C T A G A T C G C T G A
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CCACAAGGGA--
CTCACACAATGGCGC
 A C G T A C G T A C G T G T A C T A G C C G T A T G A C T G C A T G C A C A T G C T A G A T C G C T G A A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

RUNX1/MA0002.2/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CCACAAGGGA
AAACCACAGAN--
 A C G T A C G T A C G T G T A C T A G C C G T A T G A C T G C A T G C A C A T G C T A G A T C G C T G A
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCACAAGGGA
RNAACAATGG-
 A C G T G T A C T A G C C G T A T G A C T G C A T G C A C A T G C T A G A T C G C T G A
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCACAAGGGA
GTCCCCAGGGGA
 A C G T A C G T G T A C T A G C C G T A T G A C T G C A T G C A C A T G C T A G A T C G C T G A
C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A