Information for 4-GCCCGAGGGGTCA (Motif 4)

A C T G A G T C A T G C G T A C A C T G G T C A C T A G C T A G A C T G A C T G A C G T A T G C C G T A
Reverse Opposite:
C G A T A T C G G T C A T G A C G T A C A G T C A G T C A C G T G T A C C A T G A T C G A C T G A G T C
p-value:1e-11
log p-value:-2.712e+01
Information Content per bp:1.785
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.35%
Number of Background Sequences with motif26.5
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets47.5 +/- 20.7bp
Average Position of motif in Background47.4 +/- 23.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GCCCGAGGGGTCA
TGCCCNGGGGCA--
 A C G T A C T G A G T C A T G C G T A C A C T G G T C A C T A G C T A G A C T G A C T G A C G T A T G C C G T A
G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GCCCGAGGGGTCA-----
-GGCGAGGGGTCAAGGGC
 A C T G A G T C A T G C G T A C A C T G G T C A C T A G C T A G A C T G A C T G A C G T A T G C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

PB0030.1_Hnf4a_1/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GCCCGAGGGGTCA-----
-CTCCAGGGGTCAATTGA
 A C T G A G T C A T G C G T A C A C T G G T C A C T A G C T A G A C T G A C T G A C G T A T G C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

TFAP2B/MA0811.1/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GCCCGAGGGGTCA
TGCCCTNGGGCA--
 A C G T A C T G A G T C A T G C G T A C A C T G G T C A C T A G C T A G A C T G A C T G A C G T A T G C C G T A
G A C T T A C G A T G C A G T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.68
Offset:5
Orientation:forward strand
Alignment:GCCCGAGGGGTCA
-----AGRGGTCA
 A C T G A G T C A T G C G T A C A C T G G T C A C T A G C T A G A C T G A C T G A C G T A T G C C G T A
A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

PB0057.1_Rxra_1/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GCCCGAGGGGTCA-----
-NTNNNGGGGTCANGNNN
 A C T G A G T C A T G C G T A C A C T G G T C A C T A G C T A G A C T G A C T G A C G T A T G C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

TFAP2C/MA0524.2/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GCCCGAGGGGTCA
TGCCCTNGGGCA--
 A C G T A C T G A G T C A T G C G T A C A C T G G T C A C T A G C T A G A C T G A C T G A C G T A T G C C G T A
G A C T T A C G A T G C G A T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCCCGAGGGGTCA----
-CGCGCCGGGTCACGTA
 A C T G A G T C A T G C G T A C A C T G G T C A C T A G C T A G A C T G A C T G A C G T A T G C C G T A A C G T A C G T A C G T A C G T
A C G T T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GCCCGAGGGGTCA
TTGCCCTAGGGCAT-
 A C G T A C G T A C T G A G T C A T G C G T A C A C T G G T C A C T A G C T A G A C T G A C T G A C G T A T G C C G T A
C G A T G A C T T A C G A T G C A G T C A G T C A G C T T C G A T C A G C T A G A T C G A T G C C T G A C G A T A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCCCGAGGGGTCA
NGCCTGAGGCN---
 A C G T A C T G A G T C A T G C G T A C A C T G G T C A C T A G C T A G A C T G A C T G A C G T A T G C C G T A
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A T G A C G T A C G T A C G T