Information for 7-ATGATTCATTACARTC (Motif 8)

T G C A A C G T T A C G C G T A C G A T A C G T G T A C G C T A A C G T A C G T G T C A T G A C C G T A T C G A A C G T T A G C
Reverse Opposite:
A T C G T C G A A G C T A C G T A C T G C A G T G T C A C G T A C A G T A C T G T C G A C G T A A C G T A G T C G T C A A C G T
p-value:1e-11
log p-value:-2.751e+01
Information Content per bp:1.710
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.0 +/- 23.9bp
Average Position of motif in Background40.4 +/- 11.7bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:ATGATTCATTACARTC
ATGATKGATGRC----
 T G C A A C G T T A C G C G T A C G A T A C G T G T A C G C T A A C G T A C G T G T C A T G A C C G T A T C G A A C G T T A G C
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T A C G T A C G T A C G T

BATF::JUN/MA0462.1/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:ATGATTCATTACARTC
-TGAGTCATTTC----
 T G C A A C G T T A C G C G T A C G A T A C G T G T A C G C T A A C G T A C G T G T C A T G A C C G T A T C G A A C G T T A G C
A C G T C G A T A C T G C G T A A T C G A C G T G T A C C G T A C A G T G C A T G A C T G A T C A C G T A C G T A C G T A C G T

PH0038.1_Hlx/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ATGATTCATTACARTC
CCATAATTAATTACA---
 A C G T A C G T T G C A A C G T T A C G C G T A C G A T A C G T G T A C G C T A A C G T A C G T G T C A T G A C C G T A T C G A A C G T T A G C
G T A C G T A C G T C A G A C T G C T A C G T A G A C T G C A T C T G A C T G A G C A T C G A T C T G A G A T C G T C A A C G T A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:ATGATTCATTACARTC
-TGATTGATGA-----
 T G C A A C G T T A C G C G T A C G A T A C G T G T A C G C T A A C G T A C G T G T C A T G A C C G T A T C G A A C G T T A G C
A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T A C G T A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:ATGATTCATTACARTC
-ACATTCATGACACG-
 T G C A A C G T T A C G C G T A C G A T A C G T G T A C G C T A A C G T A C G T G T C A T G A C C G T A T C G A A C G T T A G C
A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G A C G T

FOS/MA0476.1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-ATGATTCATTACARTC
TGTGACTCATT------
 A C G T T G C A A C G T T A C G C G T A C G A T A C G T G T A C G C T A A C G T A C G T G T C A T G A C C G T A T C G A A C G T T A G C
C A G T T A C G A C G T A C T G C G T A A T G C A C G T A G T C C G T A A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

JDP2/MA0655.1/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:ATGATTCATTACARTC
ATGAGTCAT-------
 T G C A A C G T T A C G C G T A C G A T A C G T G T A C G C T A A C G T A C G T G T C A T G A C C G T A T C G A A C G T T A G C
C T G A C G A T C A T G G C T A A T C G G C A T T G A C C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFE2/MA0841.1/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ATGATTCATTACARTC
GATGAGTCATN------
 A C G T T G C A A C G T T A C G C G T A C G A T A C G T G T A C G C T A A C G T A C G T G T C A T G A C C G T A T C G A A C G T T A G C
T A C G T C G A A C G T C T A G T C G A A T C G C A G T G T A C C T G A A G C T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:ATGATTCATTACARTC
-TGATTTATGGC----
 T G C A A C G T T A C G C G T A C G A T A C G T G T A C G C T A A C G T A C G T G T C A T G A C C G T A T C G A A C G T T A G C
A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T A C G T A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:ATGATTCATTACARTC
NNCATTCATTCATNNN
 T G C A A C G T T A C G C G T A C G A T A C G T G T A C G C T A A C G T A C G T G T C A T G A C C G T A T C G A A C G T T A G C
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T