Information for 25-AGGCTTATGGACATTA (Motif 42)

C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C G T A C T G A C T G C G T A A G T C C G T A A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A A C G T A C T G A C G T A G T C A G T C C G T A A C G T C G T A C G T A A C T G A G T C A G T C A C G T
p-value:1e-6
log p-value:-1.427e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets66.7 +/- 16.2bp
Average Position of motif in Background55.3 +/- 23.6bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU3F1/MA0786.1/Jaspar

Match Rank:1
Score:0.61
Offset:4
Orientation:forward strand
Alignment:AGGCTTATGGACATTA
----TTATGCAAATTA
 C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C G T A C T G A C T G C G T A A G T C C G T A A C G T A C G T C G T A
A C G T A C G T A C G T A C G T C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

POU3F2/MA0787.1/Jaspar

Match Rank:2
Score:0.60
Offset:4
Orientation:forward strand
Alignment:AGGCTTATGGACATTA
----TTATGCAAATTA
 C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C G T A C T G A C T G C G T A A G T C C G T A A C G T A C G T C G T A
A C G T A C G T A C G T A C G T C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A

POU1F1/MA0784.1/Jaspar

Match Rank:3
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AGGCTTATGGACATTA-
---AATATGCAAATTAG
 C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C G T A C T G A C T G C G T A A G T C C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T C G T A C G T A C G A T C T G A G A C T C A T G A G T C G C T A C G T A G T C A C G A T A C G T C G T A C T A G

POU3F3/MA0788.1/Jaspar

Match Rank:4
Score:0.56
Offset:3
Orientation:forward strand
Alignment:AGGCTTATGGACATTA
---ATTATGCTAATTT
 C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C G T A C T G A C T G C G T A A G T C C G T A A C G T A C G T C G T A
A C G T A C G T A C G T C G T A C G A T C G A T C G T A A C G T C A T G A G T C G C A T C G T A C T G A G C A T C G A T C G A T

POU2F1/MA0785.1/Jaspar

Match Rank:5
Score:0.55
Offset:3
Orientation:forward strand
Alignment:AGGCTTATGGACATTA
---AATATGCAAATT-
 C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C G T A C T G A C T G C G T A A G T C C G T A A C G T A C G T C G T A
A C G T A C G T A C G T G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AGGCTTATGGACATTA--
--TTGTATGCAAATTAGA
 C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C G T A C T G A C T G C G T A A G T C C G T A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

Pou2f3/MA0627.1/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AGGCTTATGGACATTA--
--TTGTATGCAAATTAGA
 C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C G T A C T G A C T G C G T A A G T C C G T A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AGGCTTATGGACATTA--
--TTGTATGCAAATTAGA
 C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C G T A C T G A C T G C G T A A G T C C G T A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:AGGCTTATGGACATTA
----TTATGCAAAT--
 C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C G T A C T G A C T G C G T A A G T C C G T A A C G T A C G T C G T A
A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:10
Score:0.53
Offset:5
Orientation:forward strand
Alignment:AGGCTTATGGACATTA
-----TATGCAAAT--
 C G T A A C T G A C T G A G T C A C G T A C G T C G T A A C G T A C T G A C T G C G T A A G T C C G T A A C G T A C G T C G T A
A C G T A C G T A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T