Information for 16-ACAATAGGAA (Motif 39)

C G T A A G T C C G T A C G T A A C G T C G T A A C T G A C T G C G T A C G T A
Reverse Opposite:
A C G T A C G T A G T C A G T C A C G T C G T A A C G T A C G T A C T G A C G T
p-value:1e-6
log p-value:-1.431e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets33.2 +/- 33.2bp
Average Position of motif in Background57.7 +/- 17.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.77
Offset:-5
Orientation:reverse strand
Alignment:-----ACAATAGGAA--
NNTNNACAATGGGANNN
 A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A C G T A A C G T C G T A A C T G A C T G C G T A C G T A A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

SOX9/MA0077.1/Jaspar

Match Rank:2
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--ACAATAGGAA
GAACAATGG---
 A C G T A C G T C G T A A G T C C G T A C G T A A C G T C G T A A C T G A C T G C G T A C G T A
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T

PB0065.1_Sox15_1/Jaspar

Match Rank:3
Score:0.71
Offset:-6
Orientation:forward strand
Alignment:------ACAATAGGAA-
TAGTGAACAATAGATTT
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A C G T A A C G T C G T A A C T G A C T G C G T A C G T A A C G T
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--ACAATAGGAA
GAACAATGGN--
 A C G T A C G T C G T A A G T C C G T A C G T A A C G T C G T A A C T G A C T G C G T A C G T A
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:5
Score:0.69
Offset:-7
Orientation:forward strand
Alignment:-------ACAATAGGAA
TCACGGAACAATAGGTG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A C G T A A C G T C G T A A C T G A C T G C G T A C G T A
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

PB0106.1_Arid5a_2/Jaspar

Match Rank:6
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---ACAATAGGAA----
CATACAATACGAAATAA
 A C G T A C G T A C G T C G T A A G T C C G T A C G T A A C G T C G T A A C T G A C T G C G T A C G T A A C G T A C G T A C G T A C G T
A T G C C T A G G A C T C G T A T G A C C G T A T G C A A C G T T G C A T A G C T A C G C T G A C T G A C G T A A G C T T C G A T C G A

Sox17/MA0078.1/Jaspar

Match Rank:7
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-ACAATAGGAA
GACAATGNN--
 A C G T C G T A A G T C C G T A C G T A A C G T C G T A A C T G A C T G C G T A C G T A
T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T

PB0073.1_Sox7_1/Jaspar

Match Rank:8
Score:0.69
Offset:-8
Orientation:forward strand
Alignment:--------ACAATAGGAA----
AATAAAGAACAATAGAATTTCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A C G T A A C G T C G T A A C T G A C T G C G T A C G T A A C G T A C G T A C G T A C G T
G T C A G C T A A C G T C T G A G C T A C G T A C T A G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C T A G A C T G C A T G C A T A G T C G C T A

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---ACAATAGGAA
RNAACAATGG---
 A C G T A C G T A C G T C G T A A G T C C G T A C G T A A C G T C G T A A C T G A C T G C G T A C G T A
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---ACAATAGGAA
VRAACAATGG---
 A C G T A C G T A C G T C G T A A G T C C G T A C G T A A C G T C G T A A C T G A C T G C G T A C G T A
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T