Information for 11-TTGGGAGAAATTA (Motif 16)

G C A T A C G T A C T G A C T G A C T G C G T A C A T G C G T A G T C A G T C A A C G T A G C T G T C A
Reverse Opposite:
C A G T C T G A C G T A C A G T A C G T A C G T G A T C A C G T G T A C A G T C T A G C C G T A C G T A
p-value:1e-10
log p-value:-2.514e+01
Information Content per bp:1.761
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.81%
Number of Background Sequences with motif56.5
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets54.5 +/- 25.5bp
Average Position of motif in Background52.0 +/- 36.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0037.1_Hdx/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TTGGGAGAAATTA-----
-AAGGCGAAATCATCGCA
 G C A T A C G T A C T G A C T G A C T G C G T A C A T G C G T A G T C A G T C A A C G T A G C T G T C A A C G T A C G T A C G T A C G T A C G T
A C G T C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

PB0145.1_Mafb_2/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TTGGGAGAAATTA
CAATTGCAAAAATAT
 A C G T A C G T G C A T A C G T A C T G A C T G A C T G C G T A C A T G C G T A G T C A G T C A A C G T A G C T G T C A
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

NFATC2/MA0152.1/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TTGGGAGAAATTA
--TGGAAAA----
 G C A T A C G T A C T G A C T G A C T G C G T A C A T G C G T A G T C A G T C A A C G T A G C T G T C A
A C G T A C G T C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TTGGGAGAAATTA
CSTGGGAAAD----
 A C G T G C A T A C G T A C T G A C T G A C T G C G T A C A T G C G T A G T C A G T C A A C G T A G C T G T C A
A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A A C G T A C G T A C G T A C G T

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TTGGGAGAAATTA
TTTCTNAGAAAN--
 A C G T G C A T A C G T A C T G A C T G A C T G C G T A C A T G C G T A G T C A G T C A A C G T A G C T G T C A
A G C T A C G T A C G T A G T C G A C T G C T A C T G A A C T G C G T A C G T A T G C A G A C T A C G T A C G T

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TTGGGAGAAATTA-----
NANTGGAAAAANTGAGTCAN
 A C G T A C G T G C A T A C G T A C T G A C T G A C T G C G T A C A T G C G T A G T C A G T C A A C G T A G C T G T C A A C G T A C G T A C G T A C G T A C G T
T A C G C T G A T C G A C G A T C T A G C T A G T C G A C T G A T C G A T C G A C G T A T C G A G C A T C A T G C G T A T A C G G C A T T G A C C G T A A G C T

HOXC13/MA0907.1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TTGGGAGAAATTA
GCTCGTAAAAA---
 A C G T G C A T A C G T A C T G A C T G A C T G C G T A C A T G C G T A G T C A G T C A A C G T A G C T G T C A
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T A C G T A C G T

PH0055.1_Hoxa7_2/Jaspar

Match Rank:8
Score:0.53
Offset:3
Orientation:forward strand
Alignment:TTGGGAGAAATTA------
---GTAGTAATTAATGGAA
 G C A T A C G T A C T G A C T G A C T G C G T A C A T G C G T A G T C A G T C A A C G T A G C T G T C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A C G T T G C A A C T G G C A T G T C A C G T A A C G T C A G T C G T A T G C A A C G T T C A G A T C G G T C A T G C A

HOXC12/MA0906.1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TTGGGAGAAATTA
GGTCGTAAAAA---
 A C G T G C A T A C G T A C T G A C T G A C T G C G T A C A T G C G T A G T C A G T C A A C G T A G C T G T C A
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A A C G T A C G T A C G T

HOXD12/MA0873.1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TTGGGAGAAATTA
AGTCGTAAAAA---
 A C G T G C A T A C G T A C T G A C T G A C T G C G T A C A T G C G T A G T C A G T C A A C G T A G C T G T C A
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A A C G T A C G T A C G T