Information for 4-TCAGCACCHTGGACAG (Motif 3)

A G C T A G T C C G T A A C T G T A G C C G T A A G T C A G T C G C T A C G A T A C T G A C T G G T C A A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C G T A G T C A G T C C G T A C A G T C T A G A C T G A C G T A T C G A G T C A C G T A C T G C T G A
p-value:1e-31
log p-value:-7.190e+01
Information Content per bp:1.855
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.64%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.2 +/- 13.9bp
Average Position of motif in Background70.4 +/- 18.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-TCAGCACCHTGGACAG----
TTCAGCACCATGGACAGCGCC
 A C G T A G C T A G T C C G T A A C T G T A G C C G T A A G T C A G T C G C T A C G A T A C T G A C T G G T C A A G T C C G T A A C T G A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:TCAGCACCHTGGACAG----
TCAGCACCATGGACAGCTCC
 A G C T A G T C C G T A A C T G T A G C C G T A A G T C A G T C G C T A C G A T A C T G A C T G G T C A A G T C C G T A A C T G A C G T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.57
Offset:6
Orientation:forward strand
Alignment:TCAGCACCHTGGACAG
------CCAGGAACAG
 A G C T A G T C C G T A A C T G T A G C C G T A A G T C A G T C G C T A C G A T A C T G A C T G G T C A A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.55
Offset:6
Orientation:forward strand
Alignment:TCAGCACCHTGGACAG
------CAAAGGTCAG
 A G C T A G T C C G T A A C T G T A G C C G T A A G T C A G T C G C T A C G A T A C T G A C T G G T C A A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----TCAGCACCHTGGACAG
TGAGTCAGCA----------
 A C G T A C G T A C G T A C G T A G C T A G T C C G T A A C T G T A G C C G T A A G T C A G T C G C T A C G A T A C T G A C T G G T C A A G T C C G T A A C T G
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MAFK/MA0496.1/Jaspar

Match Rank:6
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----TCAGCACCHTGGACAG
CTGAGTCAGCAATTT------
 A C G T A C G T A C G T A C G T A C G T A G C T A G T C C G T A A C T G T A G C C G T A A G T C A G T C G C T A C G A T A C T G A C T G G T C A A G T C C G T A A C T G
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TCAGCACCHTGGACAG
GTCAGCANNTN------
 A C G T A G C T A G T C C G T A A C T G T A G C C G T A A G T C A G T C G C T A C G A T A C T G A C T G G T C A A G T C C G T A A C T G
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

Mafb/MA0117.2/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TCAGCACCHTGGACAG
NGTCAGCANTTT------
 A C G T A C G T A G C T A G T C C G T A A C T G T A G C C G T A A G T C A G T C G C T A C G A T A C T G A C T G G T C A A G T C C G T A A C T G
G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.52
Offset:7
Orientation:forward strand
Alignment:TCAGCACCHTGGACAG-
-------CAAGGHCANV
 A G C T A G T C C G T A A C T G T A G C C G T A A G T C A G T C G C T A C G A T A C T G A C T G G T C A A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.52
Offset:9
Orientation:forward strand
Alignment:TCAGCACCHTGGACAG-
---------TTGACAGC
 A G C T A G T C C G T A A C T G T A G C C G T A A G T C A G T C G C T A C G A T A C T G A C T G G T C A A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C