Information for 6-TTYSRCWYCTTGGSAA (Motif 15)

A C G T A C G T A G T C T A G C C T A G A G T C C G T A A G T C A G T C A C G T A C G T A C T G A C T G A T G C G T C A C G T A
Reverse Opposite:
A C G T A C G T A T C G A G T C A G T C C G T A C G T A A C T G C T A G C G A T A C T G A G T C A T C G C T A G C G T A C G T A
p-value:1e-8
log p-value:-1.954e+01
Information Content per bp:1.846
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.51%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.0 +/- 23.1bp
Average Position of motif in Background88.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.64
Offset:7
Orientation:reverse strand
Alignment:TTYSRCWYCTTGGSAA-
-------NNTTGGCANN
 A C G T A C G T A G T C T A G C C T A G A G T C C G T A A G T C A G T C A C G T A C G T A C T G A C T G A T G C G T C A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.63
Offset:8
Orientation:reverse strand
Alignment:TTYSRCWYCTTGGSAA
--------CTTGGCAA
 A C G T A C G T A G T C T A G C C T A G A G T C C G T A A G T C A G T C A C G T A C G T A C T G A C T G A T G C G T C A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.60
Offset:8
Orientation:reverse strand
Alignment:TTYSRCWYCTTGGSAA--
--------CSTGGGAAAD
 A C G T A C G T A G T C T A G C C T A G A G T C C G T A A G T C A G T C A C G T A C G T A C T G A C T G A T G C G T C A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.60
Offset:8
Orientation:reverse strand
Alignment:TTYSRCWYCTTGGSAA-
--------NTTGGCANN
 A C G T A C G T A G T C T A G C C T A G A G T C C G T A A G T C A G T C A C G T A C G T A C T G A C T G A T G C G T C A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.60
Offset:9
Orientation:forward strand
Alignment:TTYSRCWYCTTGGSAA
---------TTGGCA-
 A C G T A C G T A G T C T A G C C T A G A G T C C G T A A G T C A G T C A C G T A C G T A C T G A C T G A T G C G T C A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TTYSRCWYCTTGGSAA-
---GTTGCCATGGCAAC
 A C G T A C G T A G T C T A G C C T A G A G T C C G T A A G T C A G T C A C G T A C G T A C T G A C T G A T G C G T C A C G T A A C G T
A C G T A C G T A C G T C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

PB0013.1_Eomes_1/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TTYSRCWYCTTGGSAA
NNTTTTCACACCTTNNN--
 A C G T A C G T A C G T A C G T A C G T A G T C T A G C C T A G A G T C C G T A A G T C A G T C A C G T A C G T A C T G A C T G A T G C G T C A C G T A
C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C A C G T A C G T

EOMES/MA0800.1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TTYSRCWYCTTGGSAA
NTTTTCACACCTT-----
 A C G T A C G T A C G T A C G T A G T C T A G C C T A G A G T C C G T A A G T C A G T C A C G T A C G T A C T G A C T G A T G C G T C A C G T A
C T G A G C A T C A G T C G A T A G C T T G A C C T G A A G T C T C G A T G A C G A T C G A C T G A C T A C G T A C G T A C G T A C G T A C G T

TBX2/MA0688.1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TTYSRCWYCTTGGSAA
TTTCACACCTN-----
 A C G T A C G T A G T C T A G C C T A G A G T C C G T A A G T C A G T C A C G T A C G T A C T G A C T G A T G C G T C A C G T A
G C A T G C A T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T G C A T A C G T A C G T A C G T A C G T A C G T

TBR1/MA0802.1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TTYSRCWYCTTGGSAA
TTTCACACCT------
 A C G T A C G T A G T C T A G C C T A G A G T C C G T A A G T C A G T C A C G T A C G T A C T G A C T G A T G C G T C A C G T A
C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T