Information for 5-HNNMAAAGTTGGCNVC (Motif 10)

G T A C C G T A C A T G T G A C C T G A T C G A C T G A A T C G C A G T A C G T C A T G T A C G G T A C G A T C T A C G G A T C
Reverse Opposite:
C T A G A T G C C T A G C A T G A T G C G T A C T G C A G C T A T A G C G A C T A G C T G A C T A C T G G A T C G C A T C A T G
p-value:1e-10
log p-value:-2.519e+01
Information Content per bp:1.328
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.8 +/- 29.2bp
Average Position of motif in Background44.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.67
Offset:4
Orientation:forward strand
Alignment:HNNMAAAGTTGGCNVC
----CAAGATGGCGGC
 G T A C C G T A C A T G T G A C C T G A T C G A C T G A A T C G C A G T A C G T C A T G T A C G G T A C G A T C T A C G G A T C
A C G T A C G T A C G T A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

YY1/MA0095.2/Jaspar

Match Rank:2
Score:0.66
Offset:4
Orientation:forward strand
Alignment:HNNMAAAGTTGGCNVC
----CAAGATGGCGGC
 G T A C C G T A C A T G T G A C C T G A T C G A C T G A A T C G C A G T A C G T C A T G T A C G G T A C G A T C T A C G G A T C
A C G T A C G T A C G T A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.59
Offset:8
Orientation:forward strand
Alignment:HNNMAAAGTTGGCNVC
--------TTGGCA--
 G T A C C G T A C A T G T G A C C T G A T C G A C T G A A T C G C A G T A C G T C A T G T A C G G T A C G A T C T A C G G A T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:HNNMAAAGTTGGCNVC
-------NTTGGCANN
 G T A C C G T A C A T G T G A C C T G A T C G A C T G A A T C G C A G T A C G T C A T G T A C G G T A C G A T C T A C G G A T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:HNNMAAAGTTGGCNVC
------GGTTGGCAT-
 G T A C C G T A C A T G T G A C C T G A T C G A C T G A A T C G C A G T A C G T C A T G T A C G G T A C G A T C T A C G G A T C
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:HNNMAAAGTTGGCNVC
------NNTTGGCANN
 G T A C C G T A C A T G T G A C C T G A T C G A C T G A A T C G C A G T A C G T C A T G T A C G G T A C G A T C T A C G G A T C
A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

PB0047.1_Myf6_1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-HNNMAAAGTTGGCNVC
GAAGAACAGGTGTCCG-
 A C G T G T A C C G T A C A T G T G A C C T G A T C G A C T G A A T C G C A G T A C G T C A T G T A C G G T A C G A T C T A C G G A T C
T C A G T C G A C T G A A T C G T C G A C T G A A G T C C G T A A T C G A C T G G A C T A C T G A C G T A G T C G A T C A C T G A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:HNNMAAAGTTGGCNVC--
--NGTAGGTTGGCATNNN
 G T A C C G T A C A T G T G A C C T G A T C G A C T G A A T C G C A G T A C G T C A T G T A C G G T A C G A T C T A C G G A T C A C G T A C G T
A C G T A C G T C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

HLTF/MA0109.1/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:HNNMAAAGTTGGCNVC
-NNATAAGGNN-----
 G T A C C G T A C A T G T G A C C T G A T C G A C T G A A T C G C A G T A C G T C A T G T A C G G T A C G A T C T A C G G A T C
A C G T C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T A C G T A C G T A C G T A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-HNNMAAAGTTGGCNVC
ACATCAAAGG-------
 A C G T G T A C C G T A C A T G T G A C C T G A T C G A C T G A A T C G C A G T A C G T C A T G T A C G G T A C G A T C T A C G G A T C
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T