Information for 13-AGATTAGGCAAGA (Motif 13)

C G T A A C T G C G T A A C G T A C G T C G T A A C T G A C T G A G T C C G T A C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A C G T A C T G A G T C A G T C A C G T C G T A C G T A A C G T A G T C A C G T
p-value:1e-8
log p-value:-1.929e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.0 +/- 15.4bp
Average Position of motif in Background73.0 +/- 1.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.64
Offset:4
Orientation:forward strand
Alignment:AGATTAGGCAAGA--
----AAGGCAAGTGT
 C G T A A C T G C G T A A C G T A C G T C G T A A C T G A C T G A G T C C G T A C G T A A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGATTAGGCAAGA
RGGATTAR------
 A C G T C G T A A C T G C G T A A C G T A C G T C G T A A C T G A C T G A G T C C G T A C G T A A C T G C G T A
T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGATTAGGCAAGA
GGATTAGC-----
 C G T A A C T G C G T A A C G T A C G T C G T A A C T G A C T G A G T C C G T A C G T A A C T G C G T A
T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T A C G T A C G T A C G T

CEBPA/MA0102.3/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGATTAGGCAAGA
-NATTGTGCAAT-
 C G T A A C T G C G T A A C G T A C G T C G T A A C T G A C T G A G T C C G T A C G T A A C T G C G T A
A C G T C A G T T C G A A C G T A C G T C T A G A C G T A C T G G T A C C G T A C G T A A G C T A C G T

HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AGATTAGGCAAGA
--RTTATGYAAB-
 C G T A A C T G C G T A A C G T A C G T C G T A A C T G A C T G A G T C C G T A C G T A A C T G C G T A
A C G T A C G T T C A G G A C T C A G T C T G A A G C T C T A G G A C T T G C A C T G A A G T C A C G T

GSC2/MA0891.1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGATTAGGCAAGA
GNGGATTAGN-----
 A C G T A C G T C G T A A C T G C G T A A C G T A C G T C G T A A C T G A C T G A G T C C G T A C G T A A C T G C G T A
C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G A C G T A C G T A C G T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGATTAGGCAAGA
NNGGATTAGN-----
 A C G T A C G T C G T A A C T G C G T A A C G T A C G T C G T A A C T G A C T G A G T C C G T A C G T A A C T G C G T A
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T A C G T A C G T A C G T A C G T

CEBPD/MA0836.1/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AGATTAGGCAAGA
--ATTGCGCAAT-
 C G T A A C T G C G T A A C G T A C G T C G T A A C T G A C T G A G T C C G T A C G T A A C T G C G T A
A C G T A C G T T C G A A C G T A C G T C T A G G A T C T C A G G T A C G T C A C G T A A G C T A C G T

CEBPG/MA0838.1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AGATTAGGCAAGA
--ATTGCGCAAT-
 C G T A A C T G C G T A A C G T A C G T C G T A A C T G A C T G A G T C C G T A C G T A A C T G C G T A
A C G T A C G T T C G A C A G T C A G T C T A G G A T C C T A G G A T C C T G A C G T A A G C T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:10
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------AGATTAGGCAAGA
TTGCCCGGATTAGG-----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C G T A C G T C G T A A C T G A C T G A G T C C G T A C G T A A C T G C G T A
C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G A C G T A C G T A C G T A C G T A C G T