Information for 19-WCCSYCYTKKRAAGGC (Motif 35)

C G A T A G T C A G T C A T C G A G T C A G T C A G T C A C G T A C G T A C G T T C G A C G T A C G T A A C T G A C T G A G T C
Reverse Opposite:
A C T G G T A C A G T C A C G T A C G T A G C T T G A C G T C A C G T A C T A G A C T G C T A G A T G C A C T G A C T G C G T A
p-value:1e-7
log p-value:-1.707e+01
Information Content per bp:1.821
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.2 +/- 25.2bp
Average Position of motif in Background50.1 +/- 8.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.60
Offset:4
Orientation:forward strand
Alignment:WCCSYCYTKKRAAGGC
----CCTTTTATAGNC
 C G A T A G T C A G T C A T C G A G T C A G T C A G T C A C G T A C G T A C G T T C G A C G T A C G T A A C T G A C T G A G T C
A C G T A C G T A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

YY2/MA0748.1/Jaspar

Match Rank:2
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-WCCSYCYTKKRAAGGC
GTCCGCCATTA------
 A C G T C G A T A G T C A G T C A T C G A G T C A G T C A G T C A C G T A C G T A C G T T C G A C G T A C G T A A C T G A C T G A G T C
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:3
Score:0.49
Offset:5
Orientation:forward strand
Alignment:WCCSYCYTKKRAAGGC-
-----CCATATATGGNA
 C G A T A G T C A G T C A T C G A G T C A G T C A G T C A C G T A C G T A C G T T C G A C G T A C G T A A C T G A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:4
Score:0.49
Offset:5
Orientation:reverse strand
Alignment:WCCSYCYTKKRAAGGC
-----CCTTTGAWGT-
 C G A T A G T C A G T C A T C G A G T C A G T C A G T C A C G T A C G T A C G T T C G A C G T A C G T A A C T G A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.48
Offset:12
Orientation:forward strand
Alignment:WCCSYCYTKKRAAGGC----
------------AGGCCTNG
 C G A T A G T C A G T C A T C G A G T C A G T C A G T C A C G T A C G T A C G T T C G A C G T A C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:6
Score:0.48
Offset:5
Orientation:reverse strand
Alignment:WCCSYCYTKKRAAGGC
-----CSTGGGAAAD-
 C G A T A G T C A G T C A T C G A G T C A G T C A G T C A C G T A C G T A C G T T C G A C G T A C G T A A C T G A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:7
Score:0.46
Offset:9
Orientation:forward strand
Alignment:WCCSYCYTKKRAAGGC--------
---------CAAAGGCGTGGCCAG
 C G A T A G T C A G T C A T C G A G T C A G T C A G T C A C G T A C G T A C G T T C G A C G T A C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:8
Score:0.46
Offset:10
Orientation:forward strand
Alignment:WCCSYCYTKKRAAGGC----
----------CAAGGHCANV
 C G A T A G T C A G T C A T C G A G T C A G T C A G T C A C G T A C G T A C G T T C G A C G T A C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.46
Offset:8
Orientation:forward strand
Alignment:WCCSYCYTKKRAAGGC--
--------NTCAAGGTCA
 C G A T A G T C A G T C A T C G A G T C A G T C A G T C A C G T A C G T A C G T T C G A C G T A C G T A A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.46
Offset:11
Orientation:forward strand
Alignment:WCCSYCYTKKRAAGGC------
-----------AAGGCAAGTGT
 C G A T A G T C A G T C A T C G A G T C A G T C A G T C A C G T A C G T A C G T T C G A C G T A C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T