Information for 6-TCTAAATCAGGCA (Motif 6)

C G A T A G T C G C A T C T G A G T C A C G T A A G C T G T A C T C G A C A T G A T C G T G A C C G T A
Reverse Opposite:
G C A T A C T G T A G C G T A C A G C T A C T G T C G A C G A T A C G T A G C T C G T A T A C G C G T A
p-value:1e-12
log p-value:-2.959e+01
Information Content per bp:1.676
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.38%
Number of Background Sequences with motif126.2
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets42.9 +/- 27.1bp
Average Position of motif in Background53.0 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TCTAAATCAGGCA
GGCCATAAATCAC---
 A C G T A C G T A C G T C G A T A G T C G C A T C T G A G T C A C G T A A G C T G T A C T C G A C A T G A T C G T G A C C G T A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TCTAAATCAGGCA
GGCCATAAATCA----
 A C G T A C G T A C G T C G A T A G T C G C A T C T G A G T C A C G T A A G C T G T A C T C G A C A T G A T C G T G A C C G T A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:3
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TCTAAATCAGGCA
GGCCATAAATCA----
 A C G T A C G T A C G T C G A T A G T C G C A T C T G A G T C A C G T A A G C T G T A C T C G A C A T G A T C G T G A C C G T A
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TCTAAATCAGGCA
GCCATAAATCA----
 A C G T A C G T C G A T A G T C G C A T C T G A G T C A C G T A A G C T G T A C T C G A C A T G A T C G T G A C C G T A
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TCTAAATCAGGCA
--CAAATCACTG-
 C G A T A G T C G C A T C T G A G T C A C G T A A G C T G T A C T C G A C A T G A T C G T G A C C G T A
A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G A C G T

PB0162.1_Sfpi1_2/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TCTAAATCAGGCA--
-CAAATTCCGGAACC
 C G A T A G T C G C A T C T G A G T C A C G T A A G C T G T A C T C G A C A T G A T C G T G A C C G T A A C G T A C G T
A C G T G T A C G C T A C T G A G C T A G C A T C G A T G T A C T G A C T C A G T C A G C G T A G C T A G T A C G T A C

PH0037.1_Hdx/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TCTAAATCAGGCA-
AAGGCGAAATCATCGCA
 A C G T A C G T A C G T C G A T A G T C G C A T C T G A G T C A C G T A A G C T G T A C T C G A C A T G A T C G T G A C C G T A A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer

Match Rank:8
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TCTAAATCAGGCA--
-----ANCAGGAAGT
 C G A T A G T C G C A T C T G A G T C A C G T A A G C T G T A C T C G A C A T G A T C G T G A C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A T G A C T A G C T G C A A C T G A C T G C G T A C G T A T C A G G A C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TCTAAATCAGGCA
NGYCATAAAWCH----
 A C G T A C G T A C G T C G A T A G T C G C A T C T G A G T C A C G T A A G C T G T A C T C G A C A T G A T C G T G A C C G T A
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TCTAAATCAGGCA
ATTTGAATT-----
 A C G T C G A T A G T C G C A T C T G A G T C A C G T A A G C T G T A C T C G A C A T G A T C G T G A C C G T A
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T A C G T A C G T