Information for 5-CTTACTAGCGTGC (Motif 5)

A G T C A C G T A C G T G T C A A G T C A G C T C T G A C T A G A T G C C A T G A C G T A T C G A G T C
Reverse Opposite:
A C T G A T G C C G T A G A T C A T C G A G T C A G C T C T G A A C T G A C G T C G T A C G T A T A C G
p-value:1e-13
log p-value:-3.042e+01
Information Content per bp:1.821
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.2 +/- 20.5bp
Average Position of motif in Background61.7 +/- 15.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:1
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:CTTACTAGCGTGC--
-----TTGCGTGCVA
 A G T C A C G T A C G T G T C A A G T C A G C T C T G A C T A G A T G C C A T G A C G T A T C G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

HMBOX1/MA0895.1/Jaspar

Match Rank:2
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CTTACTAGCGTGC
GTTAACTAGN----
 A C G T A G T C A C G T A C G T G T C A A G T C A G C T C T G A C T A G A T G C C A T G A C G T A T C G A G T C
A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T A C G T A C G T A C G T A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:3
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CTTACTAGCGTGC
GANGTTAACTAGTTTNN
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T G T C A A G T C A G C T C T G A C T A G A T G C C A T G A C G T A T C G A G T C
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

HOXC13/MA0907.1/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CTTACTAGCGTGC
NTTTTACGAGN----
 A C G T A C G T A G T C A C G T A C G T G T C A A G T C A G C T C T G A C T A G A T G C C A T G A C G T A T C G A G T C
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T A C G T A C G T A C G T

Bcl6/MA0463.1/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CTTACTAGCGTGC-
TTTCCTAGAAAGCA
 A G T C A C G T A C G T G T C A A G T C A G C T C T G A C T A G A T G C C A T G A C G T A T C G A G T C A C G T
C A G T C G A T A G C T G T A C A G T C A C G T T C G A C T A G C T G A T C G A C T G A C A T G G T A C G C T A

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTTACTAGCGTGC-
ATTTCCCAGVAKSCY
 A C G T A G T C A C G T A C G T G T C A A G T C A G C T C T G A C T A G A T G C C A T G A C G T A T C G A G T C A C G T
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:7
Score:0.53
Offset:6
Orientation:forward strand
Alignment:CTTACTAGCGTGC
------TGCGTG-
 A G T C A C G T A C G T G T C A A G T C A G C T C T G A C T A G A T G C C A T G A C G T A T C G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:8
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----CTTACTAGCGTGC
ANATTTTACGAGNNNN-
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T G T C A A G T C A G C T C T G A C T A G A T G C C A T G A C G T A T C G A G T C
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CTTACTAGCGTGC
CTGTTGCTAGGS---
 A C G T A C G T A G T C A C G T A C G T G T C A A G T C A G C T C T G A C T A G A T G C C A T G A C G T A T C G A G T C
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T A C G T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:10
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----CTTACTAGCGTGC
NAATTTTACGAGNTNN-
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T G T C A A G T C A G C T C T G A C T A G A T G C C A T G A C G T A T C G A G T C
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T A C G T