Information for 12-AWTGTTAGAR (Motif 20)

C G T A C G A T A C G T A C T G A C G T A C G T G T C A A T C G G T C A T C A G
Reverse Opposite:
A G T C A C G T A T G C A C G T C G T A T G C A A G T C G T C A C G T A C G A T
p-value:1e-5
log p-value:-1.174e+01
Information Content per bp:1.746
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif86.1
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets60.9 +/- 19.5bp
Average Position of motif in Background49.9 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox5/MA0087.1/Jaspar

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:AWTGTTAGAR
ATTGTTA---
 C G T A C G A T A C G T A C T G A C G T A C G T G T C A A T C G G T C A T C A G
C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AWTGTTAGAR
CCATTGTTC---
 A C G T A C G T C G T A C G A T A C G T A C T G A C G T A C G T G T C A A T C G G T C A T C A G
A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T A C G T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AWTGTTAGAR
ATTGTT----
 C G T A C G A T A C G T A C T G A C G T A C G T G T C A A T C G G T C A T C A G
G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T A C G T A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:4
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----AWTGTTAGAR-
NNTTTATTGTTCTNNN
 A C G T A C G T A C G T A C G T A C G T C G T A C G A T A C G T A C T G A C G T A C G T G T C A A T C G G T C A T C A G A C G T
G C T A C G A T G C A T G A C T G C A T C G T A G A C T G C A T C T A G G A C T A G C T G A T C G A C T G C T A C G T A G C T A

PB0172.1_Sox1_2/Jaspar

Match Rank:5
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----AWTGTTAGAR
CTATAATTGTTAGCG
 A C G T A C G T A C G T A C G T A C G T C G T A C G A T A C G T A C T G A C G T A C G T G T C A A T C G G T C A T C A G
G T A C A G C T C T G A G A C T G C T A C T G A G A C T A G C T T A C G A C G T A C G T T G C A A C G T A G T C T A C G

PB0067.1_Sox18_1/Jaspar

Match Rank:6
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----AWTGTTAGAR--
TTCAATTGTTCTAAAA
 A C G T A C G T A C G T A C G T C G T A C G A T A C G T A C T G A C G T A C G T G T C A A T C G G T C A T C A G A C G T A C G T
A G C T G C A T A G T C G T C A C G T A C G A T C G A T T C A G C G A T G C A T A G T C G C A T G T C A C G T A G T C A G C T A

PB0063.1_Sox13_1/Jaspar

Match Rank:7
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----AWTGTTAGAR-
AANTTATTGTTCTNNA
 A C G T A C G T A C G T A C G T A C G T C G T A C G A T A C G T A C T G A C G T A C G T G T C A A T C G G T C A T C A G A C G T
C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A

PB0065.1_Sox15_1/Jaspar

Match Rank:8
Score:0.68
Offset:-6
Orientation:reverse strand
Alignment:------AWTGTTAGAR-
ANNTCTATTGTTCNNNA
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T A C G T A C T G A C G T A C G T G T C A A T C G G T C A T C A G A C G T
C G T A C G T A T C G A A G C T G A T C G C A T C G T A C G A T C G A T C T A G C G A T G A C T G T A C G C T A G T A C G A C T C G T A

PB0062.1_Sox12_1/Jaspar

Match Rank:9
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AWTGTTAGAR--
TAATTGTTCTAAAC
 A C G T A C G T C G T A C G A T A C G T A C T G A C G T A C G T G T C A A T C G G T C A T C A G A C G T A C G T
G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AWTGTTAGAR
CCATTGTTYB--
 A C G T A C G T C G T A C G A T A C G T A C T G A C G T A C G T G T C A A T C G G T C A T C A G
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T A C G T